Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.45□□□□□ -2.02
MSH3P20585 AC124303.1-201ENST00000605703 360 ntBASIC2.45□□□□□ -2.02
MSH3P20585 AC019193.3-201ENST00000609144 554 ntBASIC2.45□□□□□ -2.02
MSH3P20585 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC2.45□□□□□ -2.02
MSH3P20585 MIR6852-201ENST00000621699 66 ntBASIC2.45□□□□□ -2.02
MSH3P20585 AC097372.5-201ENST00000623665 376 ntBASIC2.45□□□□□ -2.02
MSH3P20585 AL359757.2-201ENST00000624309 274 ntBASIC2.45□□□□□ -2.02
MSH3P20585 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.45□□□□□ -2.02
MSH3P20585 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.45□□□□□ -2.02
MSH3P20585 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
MSH3P20585 HAUS6P2-201ENST00000433254 2404 ntBASIC2.44□□□□□ -2.02
MSH3P20585 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
MSH3P20585 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
MSH3P20585 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
MSH3P20585 Y_RNA.58-201ENST00000362807 102 ntBASIC2.44□□□□□ -2.02
MSH3P20585 Y_RNA.67-201ENST00000362870 100 ntBASIC2.44□□□□□ -2.02
MSH3P20585 SNORD56.1-201ENST00000362913 68 ntBASIC2.44□□□□□ -2.02
MSH3P20585 Y_RNA.154-201ENST00000363624 102 ntBASIC2.44□□□□□ -2.02
MSH3P20585 RNY3P1-201ENST00000365085 102 ntBASIC2.44□□□□□ -2.02
MSH3P20585 RNU6-487P-201ENST00000365430 104 ntBASIC2.44□□□□□ -2.02
MSH3P20585 RNY3-201ENST00000365484 102 ntBASIC2.44□□□□□ -2.02
MSH3P20585 Y_RNA.490-201ENST00000384413 102 ntBASIC2.44□□□□□ -2.02
MSH3P20585 RNU6-601P-201ENST00000384540 107 ntBASIC2.44□□□□□ -2.02
MSH3P20585 RNU6-306P-201ENST00000384617 107 ntBASIC2.44□□□□□ -2.02
MSH3P20585 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.44□□□□□ -2.02
MSH3P20585 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.44□□□□□ -2.02
MSH3P20585 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.44□□□□□ -2.02
MSH3P20585 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.44□□□□□ -2.02
MSH3P20585 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC2.44□□□□□ -2.02
MSH3P20585 AC243964.1-201ENST00000441814 261 ntBASIC2.44□□□□□ -2.02
MSH3P20585 AC007969.2-201ENST00000441891 191 ntBASIC2.44□□□□□ -2.02
MSH3P20585 PCMTD1P1-201ENST00000455560 355 ntBASIC2.44□□□□□ -2.02
MSH3P20585 Y_RNA.632-201ENST00000459189 102 ntBASIC2.44□□□□□ -2.02
MSH3P20585 AC073901.1-201ENST00000462471 408 ntBASIC2.44□□□□□ -2.02
MSH3P20585 PTP4A1P4-201ENST00000512479 322 ntBASIC2.44□□□□□ -2.02
MSH3P20585 RNU6-559P-201ENST00000516151 98 ntBASIC2.44□□□□□ -2.02
MSH3P20585 RNU5B-3P-201ENST00000516601 115 ntBASIC2.44□□□□□ -2.02
MSH3P20585 RNU6-1016P-201ENST00000516689 94 ntBASIC2.44□□□□□ -2.02
MSH3P20585 RNU1-54P-201ENST00000517181 120 ntBASIC2.44□□□□□ -2.02
MSH3P20585 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.44□□□□□ -2.02
MSH3P20585 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.44□□□□□ -2.02
MSH3P20585 FRG2DP-202ENST00000566967 323 ntBASIC2.44□□□□□ -2.02
MSH3P20585 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.44□□□□□ -2.02
MSH3P20585 AL359314.1-201ENST00000616913 261 ntBASIC2.44□□□□□ -2.02
MSH3P20585 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.44□□□□□ -2.02
MSH3P20585 AC098657.3-201ENST00000620434 263 ntBASIC2.44□□□□□ -2.02
MSH3P20585 MIR7515-201ENST00000637837 67 ntBASIC2.44□□□□□ -2.02
MSH3P20585 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
MSH3P20585 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
MSH3P20585 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
MSH3P20585 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
MSH3P20585 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
MSH3P20585 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.44□□□□□ -2.02
MSH3P20585 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
MSH3P20585 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
MSH3P20585 RBBP8P1-201ENST00000449447 1844 ntBASIC2.43□□□□□ -2.02
MSH3P20585 MIR517A-201ENST00000385001 87 ntBASIC2.43□□□□□ -2.02
MSH3P20585 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.43□□□□□ -2.02
MSH3P20585 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.43□□□□□ -2.02
MSH3P20585 FTH1P25-201ENST00000447665 469 ntBASIC2.43□□□□□ -2.02
MSH3P20585 SNORD5.1-201ENST00000458800 75 ntBASIC2.43□□□□□ -2.02
MSH3P20585 GZMAP1-201ENST00000503054 631 ntBASIC2.43□□□□□ -2.02
MSH3P20585 AC026782.1-201ENST00000512952 449 ntBASIC2.43□□□□□ -2.02
MSH3P20585 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.43□□□□□ -2.02
MSH3P20585 RNU6-612P-201ENST00000516909 102 ntBASIC2.43□□□□□ -2.02
MSH3P20585 SNORA31.18-201ENST00000517043 134 ntBASIC2.43□□□□□ -2.02
MSH3P20585 SCARNA11.3-201ENST00000517276 130 ntBASIC2.43□□□□□ -2.02
MSH3P20585 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.43□□□□□ -2.02
MSH3P20585 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.43□□□□□ -2.02
MSH3P20585 COX6CP5-201ENST00000527162 228 ntBASIC2.43□□□□□ -2.02
MSH3P20585 APOOP3-201ENST00000536787 586 ntBASIC2.43□□□□□ -2.02
MSH3P20585 RNU6-91P-201ENST00000607774 107 ntBASIC2.43□□□□□ -2.02
MSH3P20585 AC241585.2-209ENST00000638217 143 ntBASIC2.43□□□□□ -2.02
MSH3P20585 MTND4P29-201ENST00000503122 1372 ntBASIC2.43□□□□□ -2.02
MSH3P20585 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.43□□□□□ -2.02
MSH3P20585 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.42□□□□□ -2.02
MSH3P20585 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.42□□□□□ -2.02
MSH3P20585 U8.8-201ENST00000365399 135 ntBASIC2.42□□□□□ -2.02
MSH3P20585 RNU6-622P-201ENST00000384272 103 ntBASIC2.42□□□□□ -2.02
MSH3P20585 RNU6-1297P-201ENST00000384415 104 ntBASIC2.42□□□□□ -2.02
MSH3P20585 RNU6-692P-201ENST00000384496 107 ntBASIC2.42□□□□□ -2.02
MSH3P20585 Y_RNA.535-201ENST00000384612 99 ntBASIC2.42□□□□□ -2.02
MSH3P20585 MIR518C-201ENST00000384822 101 ntBASIC2.42□□□□□ -2.02
MSH3P20585 AL359511.1-201ENST00000402970 211 ntBASIC2.42□□□□□ -2.02
MSH3P20585 RNU6-1050P-201ENST00000410388 107 ntBASIC2.42□□□□□ -2.02
MSH3P20585 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.42□□□□□ -2.02
MSH3P20585 USP9YP30-201ENST00000430729 455 ntBASIC2.42□□□□□ -2.02
MSH3P20585 AL133396.1-201ENST00000432048 687 ntBASIC2.42□□□□□ -2.02
MSH3P20585 DAP3P1-201ENST00000441522 278 ntBASIC2.42□□□□□ -2.02
MSH3P20585 AC124916.1-201ENST00000444020 547 ntBASIC2.42□□□□□ -2.02
MSH3P20585 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.42□□□□□ -2.02
MSH3P20585 OSTCP8-201ENST00000445117 448 ntBASIC2.42□□□□□ -2.02
MSH3P20585 U8.21-201ENST00000459536 136 ntBASIC2.42□□□□□ -2.02
MSH3P20585 RNU1-104P-201ENST00000517280 175 ntBASIC2.42□□□□□ -2.02
MSH3P20585 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.42□□□□□ -2.02
MSH3P20585 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2.42□□□□□ -2.02
MSH3P20585 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.42□□□□□ -2.02
MSH3P20585 MIR4672-201ENST00000583126 81 ntBASIC2.42□□□□□ -2.02
MSH3P20585 AC018462.2-201ENST00000605375 395 ntBASIC2.42□□□□□ -2.02
MSH3P20585 AC024581.2-201ENST00000619986 252 ntBASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 210.3 ms