Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.17□□□□□ -2.22
CPSF4O95639 MIR4703-201ENST00000577728 79 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.17□□□□□ -2.22
CPSF4O95639 NIFKP6-201ENST00000598115 845 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 AL078605.1-201ENST00000603529 500 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 AC123912.5-201ENST00000605470 343 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 AC009161.2-201ENST00000624626 138 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 MIR1248-201ENST00000629190 106 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.17□□□□□ -2.22
CPSF4O95639 RNU6-1285P-201ENST00000363480 105 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 RNU6-1164P-201ENST00000364428 107 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
CPSF4O95639 SNORD14D-201ENST00000384390 87 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 RNU6-393P-201ENST00000384475 107 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 MIR29C-201ENST00000385231 88 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 SNORD70.1-201ENST00000391007 85 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 SNORA40.6-201ENST00000391153 128 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 AL049545.1-201ENST00000401856 572 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 VN1R36P-201ENST00000414936 291 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.16□□□□□ -2.22
CPSF4O95639 MTCO2P34-201ENST00000421994 607 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 AC092447.3-201ENST00000426027 686 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.16□□□□□ -2.22
CPSF4O95639 PRPS1P1-201ENST00000445305 876 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 AL357134.1-201ENST00000445848 426 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 AC022364.2-201ENST00000457963 554 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.16□□□□□ -2.22
CPSF4O95639 RN7SKP210-201ENST00000459176 261 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 MTCO2P6-201ENST00000463134 685 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.16□□□□□ -2.22
CPSF4O95639 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.16□□□□□ -2.22
CPSF4O95639 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.16□□□□□ -2.22
CPSF4O95639 RNU2-69P-201ENST00000516061 100 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 RNU5F-2P-201ENST00000516066 82 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
CPSF4O95639 AP001893.2-201ENST00000526949 202 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 AC023050.3-201ENST00000541142 333 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 AC099842.1-201ENST00000619919 596 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 AC022418.1-201ENST00000624118 445 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 AC091812.1-201ENST00000432235 1948 ntBASIC1.16□□□□□ -2.22
CPSF4O95639 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
CPSF4O95639 RNU6-428P-201ENST00000362942 107 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 RNU6-336P-201ENST00000364891 107 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 U8.10-201ENST00000384260 133 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 RNU6-692P-201ENST00000384496 107 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 SNORA8-201ENST00000384574 139 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 RNU6-1127P-201ENST00000384580 107 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 MIR597-201ENST00000384968 97 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 SNORA16.2-201ENST00000390991 127 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 RNU11-3P-201ENST00000391111 133 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 SNORA17.3-201ENST00000391159 129 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 BTF3L4P2-201ENST00000392798 346 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 RNU2-9P-201ENST00000410194 145 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 RNU6-1245P-201ENST00000411130 106 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 RN7SKP142-201ENST00000411236 328 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 RNU6-293P-201ENST00000411259 106 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 SRIP3-201ENST00000413200 219 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 CBX3P6-201ENST00000430257 527 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC1.15□□□□□ -2.23
CPSF4O95639 AL358934.1-201ENST00000432346 324 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.15□□□□□ -2.23
CPSF4O95639 MTND2P29-201ENST00000438595 412 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 AC245102.2-201ENST00000448956 180 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 HSPE1P24-201ENST00000450782 238 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 MTND1P27-201ENST00000451117 902 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC1.15□□□□□ -2.23
CPSF4O95639 C1DP4-201ENST00000455429 424 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.15□□□□□ -2.23
CPSF4O95639 RNU1-98P-201ENST00000458992 160 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.15□□□□□ -2.23
CPSF4O95639 AC027575.1-201ENST00000481064 460 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC1.15□□□□□ -2.23
CPSF4O95639 LRRC34P2-201ENST00000514850 553 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 AP005660.1-201ENST00000522972 293 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 AP002963.1-201ENST00000530590 184 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 SUB1P2-201ENST00000556401 297 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 MIR4421-201ENST00000578133 69 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 AC040904.1-201ENST00000590850 223 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.15□□□□□ -2.23
CPSF4O95639 AC025449.1-201ENST00000603896 529 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.15□□□□□ -2.23
CPSF4O95639 uc_338.11-201ENST00000619132 160 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 AC136475.10-201ENST00000620253 385 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 AP000770.2-201ENST00000623694 100 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.15□□□□□ -2.23
CPSF4O95639 SRP54-214ENST00000630962 162 ntTSL 5 BASIC1.15□□□□□ -2.23
CPSF4O95639 AL390237.1-201ENST00000404226 1415 ntBASIC1.15□□□□□ -2.23
CPSF4O95639 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
CPSF4O95639 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.14□□□□□ -2.23
CPSF4O95639 RNU4-15P-201ENST00000362613 141 ntBASIC1.14□□□□□ -2.23
CPSF4O95639 RNU6-434P-201ENST00000384376 107 ntBASIC1.14□□□□□ -2.23
CPSF4O95639 RNU6-606P-201ENST00000384721 111 ntBASIC1.14□□□□□ -2.23
CPSF4O95639 MIR764-201ENST00000390811 85 ntBASIC1.14□□□□□ -2.23
CPSF4O95639 RNA5SP465-201ENST00000391195 109 ntBASIC1.14□□□□□ -2.23
CPSF4O95639 RNU4-62P-201ENST00000410125 130 ntBASIC1.14□□□□□ -2.23
CPSF4O95639 RN7SKP284-201ENST00000411002 343 ntBASIC1.14□□□□□ -2.23
CPSF4O95639 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.14□□□□□ -2.23
CPSF4O95639 AL590556.1-201ENST00000423231 483 ntBASIC1.14□□□□□ -2.23
CPSF4O95639 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.14□□□□□ -2.23
CPSF4O95639 MTCO2P11-201ENST00000431069 680 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms