Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.98□□□□□ -2.09
SDC3O75056 AC026271.5-201ENST00000577873 130 ntBASIC1.98□□□□□ -2.09
SDC3O75056 AC091135.1-201ENST00000585943 307 ntBASIC1.98□□□□□ -2.09
SDC3O75056 BNIP3P16-201ENST00000589779 534 ntBASIC1.98□□□□□ -2.09
SDC3O75056 AC068792.1-201ENST00000621354 417 ntBASIC1.98□□□□□ -2.09
SDC3O75056 AL359880.1-201ENST00000621879 266 ntBASIC1.98□□□□□ -2.09
SDC3O75056 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.97□□□□□ -2.09
SDC3O75056 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SDC3O75056 RNU6-82P-201ENST00000363970 107 ntBASIC1.97□□□□□ -2.09
SDC3O75056 RNU6-1222P-201ENST00000384615 107 ntBASIC1.97□□□□□ -2.09
SDC3O75056 MIR17-201ENST00000385012 84 ntBASIC1.97□□□□□ -2.09
SDC3O75056 SNORA26.9-201ENST00000391322 122 ntBASIC1.97□□□□□ -2.09
SDC3O75056 RPS29P13-201ENST00000402041 169 ntBASIC1.97□□□□□ -2.09
SDC3O75056 RNU2-40P-201ENST00000410833 196 ntBASIC1.97□□□□□ -2.09
SDC3O75056 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.97□□□□□ -2.09
SDC3O75056 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.97□□□□□ -2.09
SDC3O75056 RPL39P29-201ENST00000447779 157 ntBASIC1.97□□□□□ -2.09
SDC3O75056 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.97□□□□□ -2.09
SDC3O75056 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.97□□□□□ -2.09
SDC3O75056 SRRM1P2-201ENST00000464531 1192 ntBASIC1.97□□□□□ -2.09
SDC3O75056 RPL30P1-201ENST00000488676 339 ntBASIC1.97□□□□□ -2.09
SDC3O75056 AC018868.1-201ENST00000491307 315 ntBASIC1.97□□□□□ -2.09
SDC3O75056 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.97□□□□□ -2.09
SDC3O75056 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.97□□□□□ -2.09
SDC3O75056 RN7SKP256-201ENST00000517201 314 ntBASIC1.97□□□□□ -2.09
SDC3O75056 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.97□□□□□ -2.09
SDC3O75056 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.97□□□□□ -2.09
SDC3O75056 OR11H5P-201ENST00000554039 926 ntBASIC1.97□□□□□ -2.09
SDC3O75056 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.97□□□□□ -2.09
SDC3O75056 AC110588.1-201ENST00000559699 137 ntBASIC1.97□□□□□ -2.09
SDC3O75056 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.97□□□□□ -2.09
SDC3O75056 MIR4287-201ENST00000579398 78 ntBASIC1.97□□□□□ -2.09
SDC3O75056 AC103591.3-201ENST00000608684 209 ntBASIC1.97□□□□□ -2.09
SDC3O75056 AC004908.3-201ENST00000610248 625 ntBASIC1.97□□□□□ -2.09
SDC3O75056 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.97□□□□□ -2.09
SDC3O75056 AC092881.1-201ENST00000638218 2733 ntBASIC1.96□□□□□ -2.1
SDC3O75056 RNU1-17P-201ENST00000363022 152 ntBASIC1.96□□□□□ -2.1
SDC3O75056 RNU6-1085P-201ENST00000363576 107 ntBASIC1.96□□□□□ -2.1
SDC3O75056 RNU4-40P-201ENST00000364351 143 ntBASIC1.96□□□□□ -2.1
SDC3O75056 U3.13-201ENST00000364804 214 ntBASIC1.96□□□□□ -2.1
SDC3O75056 Y_RNA.409-201ENST00000383990 98 ntBASIC1.96□□□□□ -2.1
SDC3O75056 HMGN2P39-201ENST00000398005 273 ntBASIC1.96□□□□□ -2.1
SDC3O75056 CALM2P3-201ENST00000400429 449 ntBASIC1.96□□□□□ -2.1
SDC3O75056 USP9YP18-201ENST00000425912 695 ntBASIC1.96□□□□□ -2.1
SDC3O75056 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.96□□□□□ -2.1
SDC3O75056 AC243964.1-201ENST00000441814 261 ntBASIC1.96□□□□□ -2.1
SDC3O75056 USP9YP8-201ENST00000441913 500 ntBASIC1.96□□□□□ -2.1
SDC3O75056 MTND1P1-201ENST00000445453 368 ntBASIC1.96□□□□□ -2.1
SDC3O75056 AC007677.1-201ENST00000445757 515 ntBASIC1.96□□□□□ -2.1
SDC3O75056 RPL30P12-201ENST00000474666 353 ntBASIC1.96□□□□□ -2.1
SDC3O75056 RNU6-835P-201ENST00000516974 104 ntBASIC1.96□□□□□ -2.1
SDC3O75056 RNU6-667P-201ENST00000517186 102 ntBASIC1.96□□□□□ -2.1
SDC3O75056 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.96□□□□□ -2.1
SDC3O75056 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.96□□□□□ -2.1
SDC3O75056 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.96□□□□□ -2.1
SDC3O75056 AC103987.3-201ENST00000582071 292 ntBASIC1.96□□□□□ -2.1
SDC3O75056 KPNA2P1-201ENST00000458289 1591 ntBASIC1.96□□□□□ -2.1
SDC3O75056 RNU6-1285P-201ENST00000363480 105 ntBASIC1.95□□□□□ -2.1
SDC3O75056 RNU6-336P-201ENST00000364891 107 ntBASIC1.95□□□□□ -2.1
SDC3O75056 SNORA69-201ENST00000383895 132 ntBASIC1.95□□□□□ -2.1
SDC3O75056 MIR544A-201ENST00000384855 91 ntBASIC1.95□□□□□ -2.1
SDC3O75056 RNU6-1245P-201ENST00000411130 106 ntBASIC1.95□□□□□ -2.1
SDC3O75056 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.95□□□□□ -2.1
SDC3O75056 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.95□□□□□ -2.1
SDC3O75056 AC003989.2-201ENST00000440224 169 ntBASIC1.95□□□□□ -2.1
SDC3O75056 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.95□□□□□ -2.1
SDC3O75056 AL137159.1-201ENST00000452808 512 ntBASIC1.95□□□□□ -2.1
SDC3O75056 MTCO3P38-201ENST00000468910 766 ntBASIC1.95□□□□□ -2.1
SDC3O75056 HMGB1P35-201ENST00000503360 598 ntBASIC1.95□□□□□ -2.1
SDC3O75056 AC019235.1-201ENST00000503847 207 ntBASIC1.95□□□□□ -2.1
SDC3O75056 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.95□□□□□ -2.1
SDC3O75056 AC091885.1-201ENST00000506658 268 ntBASIC1.95□□□□□ -2.1
SDC3O75056 Y_RNA.693-201ENST00000516641 110 ntBASIC1.95□□□□□ -2.1
SDC3O75056 AC115990.1-201ENST00000526957 301 ntBASIC1.95□□□□□ -2.1
SDC3O75056 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.95□□□□□ -2.1
SDC3O75056 NDUFA5P6-201ENST00000542110 379 ntBASIC1.95□□□□□ -2.1
SDC3O75056 MIR4448-201ENST00000584360 86 ntBASIC1.95□□□□□ -2.1
SDC3O75056 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.95□□□□□ -2.1
SDC3O75056 AC093783.1-201ENST00000612976 329 ntBASIC1.95□□□□□ -2.1
SDC3O75056 YWHAEP7-203ENST00000622054 312 ntBASIC1.95□□□□□ -2.1
SDC3O75056 AC097372.5-201ENST00000623665 376 ntBASIC1.95□□□□□ -2.1
SDC3O75056 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
SDC3O75056 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
SDC3O75056 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.94□□□□□ -2.1
SDC3O75056 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.94□□□□□ -2.1
SDC3O75056 CENPCP1-201ENST00000533085 2578 ntBASIC1.94□□□□□ -2.1
SDC3O75056 RNA5SP276-201ENST00000362580 94 ntBASIC1.94□□□□□ -2.1
SDC3O75056 SNORD115-3-201ENST00000363100 82 ntBASIC1.94□□□□□ -2.1
SDC3O75056 RNU6-623P-201ENST00000363143 105 ntBASIC1.94□□□□□ -2.1
SDC3O75056 RNA5SP138-201ENST00000365098 114 ntBASIC1.94□□□□□ -2.1
SDC3O75056 RNU6-38P-201ENST00000384085 107 ntBASIC1.94□□□□□ -2.1
SDC3O75056 Y_RNA.436-201ENST00000384097 102 ntBASIC1.94□□□□□ -2.1
SDC3O75056 RNU6-1274P-201ENST00000384557 107 ntBASIC1.94□□□□□ -2.1
SDC3O75056 MIR29B2-201ENST00000385055 81 ntBASIC1.94□□□□□ -2.1
SDC3O75056 RNU6-648P-201ENST00000410190 107 ntBASIC1.94□□□□□ -2.1
SDC3O75056 RNU2-32P-201ENST00000411193 191 ntBASIC1.94□□□□□ -2.1
SDC3O75056 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.94□□□□□ -2.1
SDC3O75056 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.94□□□□□ -2.1
SDC3O75056 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.94□□□□□ -2.1
SDC3O75056 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 176.6 ms