Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 IPO7P1-201ENST00000442031 636 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AL353752.1-201ENST00000454946 260 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 RPS29P11-201ENST00000496507 171 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AC008526.1-201ENST00000509149 338 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 LRRC34P2-201ENST00000514850 553 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 CENPUP1-201ENST00000526649 1202 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AP005597.4-201ENST00000526762 229 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 HMGB1P33-201ENST00000563485 527 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AC093249.1-201ENST00000567049 203 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AC090897.2-201ENST00000581715 130 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AC004492.1-201ENST00000607036 742 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AC104458.1-201ENST00000608243 463 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AC069294.1-201ENST00000608397 350 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AC092807.2-201ENST00000609367 243 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 SCARNA4-202ENST00000625402 129 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AC024614.3-201ENST00000637860 256 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AC068137.4-201ENST00000638485 296 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 AC010329.5-201ENST00000623497 2174 ntBASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC1.48□□□□□ -2.17
TRAV40A0A0B4J280 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-1252P-201ENST00000363054 104 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-486P-201ENST00000363116 107 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-527P-201ENST00000363425 104 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 U3.13-201ENST00000364804 214 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 MIR544A-201ENST00000384855 91 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 SNORD115-47-201ENST00000391226 86 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 AL627390.1-201ENST00000396055 340 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 U6atac.2-201ENST00000408644 118 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 U3.40-201ENST00000408706 208 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-1148P-201ENST00000410992 104 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-293P-201ENST00000411259 106 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 POLHP1-201ENST00000411806 470 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 OR9R1P-201ENST00000412200 877 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 AC138623.1-201ENST00000418060 216 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 AL117339.3-201ENST00000418733 162 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 MRPS10P2-201ENST00000431226 381 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 SNORD13-201ENST00000459299 104 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 SNRPGP7-201ENST00000469016 106 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 CKS1BP2-201ENST00000497342 240 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-718P-201ENST00000516166 105 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-991P-201ENST00000516168 107 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 AC104576.1-201ENST00000524225 88 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 MIR5692C1-201ENST00000585309 91 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 BNIP3P25-201ENST00000596023 559 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 RPL30P11-203ENST00000598995 310 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 AC107304.1-201ENST00000604229 296 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 AL138963.2-201ENST00000605137 226 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 RNU6-89P-201ENST00000606519 100 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 AC064836.2-201ENST00000609491 462 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 AC068944.2-201ENST00000610373 403 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 MIR8081-201ENST00000611533 95 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 KPNA2P1-201ENST00000458289 1591 ntBASIC1.47□□□□□ -2.17
TRAV40A0A0B4J280 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 snoU2_19.1-201ENST00000362361 80 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 RNU6-212P-201ENST00000362642 104 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 Y_RNA.256-201ENST00000364594 104 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 SNORA16.1-201ENST00000364597 132 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 RNA5SP190-201ENST00000365222 118 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 SNORA6-201ENST00000384033 151 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 RAP1BP3-201ENST00000407180 549 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 RNA5SP489-201ENST00000410986 109 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 TIMM9P3-201ENST00000428659 274 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 AC092989.1-201ENST00000481235 277 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 AC018868.1-201ENST00000491307 315 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 RNA5SP112-201ENST00000515937 99 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 SNORA14.1-201ENST00000516113 141 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 Y_RNA.665-201ENST00000516177 98 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 RNU2-53P-201ENST00000516257 147 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 MTND1P35-201ENST00000526739 508 ntBASIC1.46□□□□□ -2.18
TRAV40A0A0B4J280 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms