Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 MIR548I3-201ENST00000408378 149 ntBASIC4.41□□□□□ -1.7
BRPF3Q9ULD4 MIR548I1-201ENST00000408810 149 ntBASIC4.41□□□□□ -1.7
BRPF3Q9ULD4 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC4.41□□□□□ -1.7
BRPF3Q9ULD4 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4.41□□□□□ -1.7
BRPF3Q9ULD4 RNU5F-8P-201ENST00000515941 111 ntBASIC4.41□□□□□ -1.7
BRPF3Q9ULD4 ACA59.2-201ENST00000517061 156 ntBASIC4.41□□□□□ -1.7
BRPF3Q9ULD4 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.41□□□□□ -1.7
BRPF3Q9ULD4 CYCSP30-201ENST00000546447 172 ntBASIC4.41□□□□□ -1.7
BRPF3Q9ULD4 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.41□□□□□ -1.7
BRPF3Q9ULD4 AC073657.2-201ENST00000605661 303 ntBASIC4.41□□□□□ -1.7
BRPF3Q9ULD4 MAPK10-373ENST00000641983 6772 ntBASIC4.41□□□□□ -1.7
BRPF3Q9ULD4 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
BRPF3Q9ULD4 HAUS6P2-201ENST00000433254 2404 ntBASIC4.41□□□□□ -1.7
BRPF3Q9ULD4 FAM35CP-201ENST00000554755 2470 ntBASIC4.4□□□□□ -1.7
BRPF3Q9ULD4 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
BRPF3Q9ULD4 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
BRPF3Q9ULD4 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
BRPF3Q9ULD4 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
BRPF3Q9ULD4 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
BRPF3Q9ULD4 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 SNORA36A-201ENST00000384221 132 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 Y_RNA.541-201ENST00000384640 113 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 U8.11-201ENST00000384699 133 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 U8.12-201ENST00000384701 133 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 EI24P2-201ENST00000397776 1076 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 AC078809.1-201ENST00000427601 140 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 NDUFB1P1-201ENST00000435191 180 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 AC096638.1-201ENST00000444678 216 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 AC006539.3-201ENST00000454258 129 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 RPS4XP2-201ENST00000458402 793 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 snoU13.28-201ENST00000459235 104 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 U8.18-201ENST00000459285 133 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 AC093331.1-201ENST00000521474 169 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 AC005296.1-201ENST00000616145 209 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 AL450472.1-202ENST00000637286 180 ntBASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.4□□□□□ -1.71
BRPF3Q9ULD4 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 AC099654.7-201ENST00000635788 2127 ntBASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 RNA5SP361-201ENST00000362686 118 ntBASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 RNU6-200P-201ENST00000364743 107 ntBASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 MIR487A-201ENST00000385009 80 ntBASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 AL603910.2-201ENST00000407268 136 ntBASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 SNORD12B-201ENST00000410433 91 ntBASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 WARS2P1-201ENST00000429678 537 ntBASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 RPL39P29-201ENST00000447779 157 ntBASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 AL139109.1-201ENST00000455491 297 ntBASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 RNU6-138P-201ENST00000515952 107 ntBASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 AP000867.2-201ENST00000532468 320 ntBASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 MIR5685-201ENST00000579080 79 ntBASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 MIR5695-201ENST00000579717 85 ntBASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 AL359198.2-201ENST00000611836 194 ntBASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
BRPF3Q9ULD4 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 RBBP8P1-201ENST00000449447 1844 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 AC092268.1-201ENST00000342691 405 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 Y_RNA.54-201ENST00000362766 105 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 RNU6-137P-201ENST00000363680 108 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 RNU1-64P-201ENST00000365443 163 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 RNU6-209P-201ENST00000384118 107 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 RNU4-70P-201ENST00000384579 139 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 MIR10B-201ENST00000385011 110 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 SNORA57.1-201ENST00000391227 145 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 RNA5SP390-201ENST00000410191 113 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 RNA5SP293-201ENST00000410527 113 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 AL591419.1-201ENST00000427423 339 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 AC244670.1-201ENST00000436879 112 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 AC010099.1-201ENST00000455434 375 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 RPS27P29-201ENST00000463110 252 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 AP002884.2-201ENST00000471647 395 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 RPL30P12-201ENST00000474666 353 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 RNU6-496P-201ENST00000516145 99 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 RNU6-58P-201ENST00000517143 103 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 MDM2-232ENST00000544561 213 ntTSL 5 BASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 TGIF1P1-201ENST00000558095 802 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 UBL5P4-201ENST00000562584 236 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 AC090897.2-201ENST00000581715 130 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 AL138963.2-201ENST00000605137 226 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 MIR7153-201ENST00000637758 57 ntBASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 117.5 ms