Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SNORD116-19-201ENST00000384729 92 ntBASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 RNU6-750P-201ENST00000390946 107 ntBASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 RNU2-49P-201ENST00000410666 184 ntBASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 AC108751.2-201ENST00000469993 231 ntBASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 RNA5SP143-201ENST00000516936 115 ntBASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 RNU1-45P-201ENST00000517191 141 ntBASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 AL391813.1-201ENST00000603098 260 ntBASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 MFSD8-242ENST00000641690 4199 ntBASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 SNORD114-7-201ENST00000362520 77 ntBASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 RNU4-10P-201ENST00000364383 140 ntBASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 SNORA70.4-201ENST00000365509 134 ntBASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 U1.1-201ENST00000384101 164 ntBASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 RNU2-37P-201ENST00000410695 177 ntBASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 AL358232.1-201ENST00000448030 501 ntBASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 RPL23AP97-201ENST00000568955 471 ntBASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 RNU1-30P-201ENST00000606575 163 ntBASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 AC125257.1-201ENST00000560400 2930 ntBASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.67□□□□□ -1.66
LIMD1Q9UGP4 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 MIR331-201ENST00000362302 94 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 RNU6-969P-201ENST00000383900 105 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 SNORA67.2-201ENST00000384300 149 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 SNORD20-201ENST00000384550 80 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 RNU6-1228P-201ENST00000391014 107 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 AL117339.2-201ENST00000430475 180 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 AL121914.1-201ENST00000450188 156 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 AC010099.1-201ENST00000455434 375 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 RNU6-1333P-201ENST00000516162 93 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 RNU6-971P-201ENST00000516920 106 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 AP000867.2-201ENST00000532468 320 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 AC112693.2-201ENST00000556538 232 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 MIR3646-201ENST00000578301 84 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 MIR4724-201ENST00000579485 89 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 AL137843.1-201ENST00000605078 385 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 AC010680.1-201ENST00000590024 3590 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 AC006971.1-201ENST00000407916 4486 ntBASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
LIMD1Q9UGP4 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC4.65□□□□□ -1.66
LIMD1Q9UGP4 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
LIMD1Q9UGP4 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.65□□□□□ -1.66
LIMD1Q9UGP4 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
LIMD1Q9UGP4 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
LIMD1Q9UGP4 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
LIMD1Q9UGP4 Y_RNA.172-201ENST00000363765 102 ntBASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 RNU6-1048P-201ENST00000364054 107 ntBASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 RNU6-215P-201ENST00000365169 102 ntBASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 SNORD37.2-201ENST00000391075 66 ntBASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 AC006461.1-201ENST00000412637 326 ntBASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 RNU7-141P-201ENST00000459304 62 ntBASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 AC113403.1-201ENST00000604910 193 ntBASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 AC025754.2-201ENST00000606491 432 ntBASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 uc_338.14-201ENST00000613162 166 ntBASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 AL354798.1-201ENST00000622505 329 ntBASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 AL672167.1-203ENST00000641299 2975 ntBASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
LIMD1Q9UGP4 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 IL33-202ENST00000417746 2327 ntTSL 2 BASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 MIR367-201ENST00000362299 68 ntBASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 Y_RNA.71-201ENST00000362892 104 ntBASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 RNU6-643P-201ENST00000384018 107 ntBASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 SNORA11.1-201ENST00000408133 129 ntBASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms