Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 C1DP4-201ENST00000455429 424 ntBASIC1.61□□□□□ -2.15
TRIM40Q6P9F5 AC079382.1-201ENST00000493346 557 ntBASIC1.61□□□□□ -2.15
TRIM40Q6P9F5 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC1.61□□□□□ -2.15
TRIM40Q6P9F5 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.61□□□□□ -2.15
TRIM40Q6P9F5 RNU2-69P-201ENST00000516061 100 ntBASIC1.61□□□□□ -2.15
TRIM40Q6P9F5 SNORA25.15-201ENST00000516487 89 ntBASIC1.61□□□□□ -2.15
TRIM40Q6P9F5 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.61□□□□□ -2.15
TRIM40Q6P9F5 AC040904.1-201ENST00000590850 223 ntBASIC1.61□□□□□ -2.15
TRIM40Q6P9F5 AC068790.2-201ENST00000602601 557 ntBASIC1.61□□□□□ -2.15
TRIM40Q6P9F5 AC123912.5-201ENST00000605470 343 ntBASIC1.61□□□□□ -2.15
TRIM40Q6P9F5 AC063943.3-201ENST00000615562 356 ntBASIC1.61□□□□□ -2.15
TRIM40Q6P9F5 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.61□□□□□ -2.15
TRIM40Q6P9F5 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
TRIM40Q6P9F5 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
TRIM40Q6P9F5 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.61□□□□□ -2.15
TRIM40Q6P9F5 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 SNORA16.2-201ENST00000390991 127 ntBASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 SNORD70.1-201ENST00000391007 85 ntBASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 BTF3L4P2-201ENST00000392798 346 ntBASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 MTCO2P11-201ENST00000431069 680 ntBASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 HMGN2P23-201ENST00000456759 269 ntBASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 AC009646.1-201ENST00000510455 318 ntBASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 RNU6-430P-201ENST00000517078 107 ntBASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 SUB1P2-201ENST00000556401 297 ntBASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 BNIP3P16-201ENST00000589779 534 ntBASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 AC018889.1-201ENST00000605372 397 ntBASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 AC025754.2-201ENST00000606491 432 ntBASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 AC104073.3-201ENST00000610942 955 ntBASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 MIR8081-201ENST00000611533 95 ntBASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 AL773524.1-201ENST00000614065 229 ntBASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.6□□□□□ -2.15
TRIM40Q6P9F5 RNU6-743P-201ENST00000364151 106 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 RNU6-336P-201ENST00000364891 107 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AL627390.1-201ENST00000396055 340 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 RNU2-9P-201ENST00000410194 145 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 RNU2-29P-201ENST00000410423 189 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 RNU6-293P-201ENST00000411259 106 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AC244636.1-201ENST00000421152 228 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 MTCO2P34-201ENST00000421994 607 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AL358934.1-201ENST00000432346 324 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 RPL23AP6-201ENST00000446637 472 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AC013470.1-201ENST00000453438 462 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 SCARNA18-201ENST00000459004 134 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AC079140.5-201ENST00000507882 310 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 SNORA25.17-201ENST00000517184 124 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 MTCO2P4-201ENST00000517968 247 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AP005435.4-201ENST00000529514 284 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 MTCO3P23-201ENST00000561363 289 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AC103987.3-201ENST00000582071 292 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AC008752.3-201ENST00000588113 712 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AL078605.1-201ENST00000603529 500 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AC091805.2-201ENST00000603848 235 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AC025449.1-201ENST00000603896 529 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AC121247.2-201ENST00000604776 136 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AP001596.2-201ENST00000608410 312 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AC073114.1-201ENST00000612027 490 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AC005296.1-201ENST00000616145 209 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 MIR1248-201ENST00000629190 106 ntBASIC1.59□□□□□ -2.15
TRIM40Q6P9F5 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
TRIM40Q6P9F5 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
TRIM40Q6P9F5 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
TRIM40Q6P9F5 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 RNU6-428P-201ENST00000362942 107 ntBASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 RNU6-1164P-201ENST00000364428 107 ntBASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 SNORA8-201ENST00000384574 139 ntBASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 OFD1P4Y-201ENST00000455273 1179 ntBASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 BET1P1-201ENST00000482276 359 ntBASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 AC022447.4-201ENST00000504053 364 ntBASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 AC105417.1-201ENST00000514691 285 ntBASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 AP005639.2-201ENST00000527592 928 ntBASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 AL391840.1-201ENST00000571144 367 ntBASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 RSL24D1P11-201ENST00000591045 491 ntBASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 AL034555.1-201ENST00000604816 211 ntBASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
TRIM40Q6P9F5 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms