Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC120349.3-201ENST00000624377 529 ntBASIC0.04□□□□□ -2.4
USF3Q68DE3 RNU6-438P-201ENST00000365561 103 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 RNU6-1274P-201ENST00000384557 107 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 MIR186-201ENST00000384988 86 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 SNORD89-201ENST00000390981 114 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 BTF3P15-201ENST00000455606 336 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 AC116655.1-201ENST00000508324 901 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 SNORD79.1-201ENST00000516069 84 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC0.03□□□□□ -2.4
USF3Q68DE3 KATNBL1P5-201ENST00000605015 517 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 MIR3976-201ENST00000606807 139 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 AC009032.1-201ENST00000617574 431 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 MIR6516-201ENST00000630554 81 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 SNORD114-19-201ENST00000363072 75 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 RNU6-1327P-201ENST00000365302 105 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 AL590084.2-201ENST00000401481 382 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 Y_RNA.597-201ENST00000410463 100 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 ISCA1P1-201ENST00000426679 387 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 MTCO3P18-201ENST00000440206 761 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 MTCO3P45-201ENST00000443036 613 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 FABP5P15-201ENST00000453566 214 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC0.03□□□□□ -2.4
USF3Q68DE3 AC108740.1-201ENST00000498629 225 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 MTCO3P7-201ENST00000510008 774 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 AC024589.1-201ENST00000512207 263 ntBASIC0.03□□□□□ -2.4
USF3Q68DE3 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.03□□□□□ -2.4
USF3Q68DE3 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.03□□□□□ -2.4
USF3Q68DE3 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.03□□□□□ -2.4
USF3Q68DE3 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.02□□□□□ -2.41
USF3Q68DE3 RNA5SP331-201ENST00000364986 107 ntBASIC0.02□□□□□ -2.41
USF3Q68DE3 RNU6-40P-201ENST00000384254 107 ntBASIC0.02□□□□□ -2.41
USF3Q68DE3 RPS3AP1-201ENST00000413190 320 ntBASIC0.02□□□□□ -2.41
USF3Q68DE3 RPL22P18-201ENST00000417197 377 ntBASIC0.02□□□□□ -2.41
USF3Q68DE3 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC0.02□□□□□ -2.41
USF3Q68DE3 AC130509.1-201ENST00000464158 433 ntBASIC0.02□□□□□ -2.41
USF3Q68DE3 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.02□□□□□ -2.41
USF3Q68DE3 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.02□□□□□ -2.41
USF3Q68DE3 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC0.02□□□□□ -2.41
USF3Q68DE3 AL513534.2-201ENST00000603836 250 ntBASIC0.02□□□□□ -2.41
USF3Q68DE3 SNORD44.1-201ENST00000363202 61 ntBASIC0.02□□□□□ -2.41
USF3Q68DE3 SNORD114-15-201ENST00000364687 72 ntBASIC0.02□□□□□ -2.41
USF3Q68DE3 MIR16-1-201ENST00000385271 89 ntBASIC0.02□□□□□ -2.41
USF3Q68DE3 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC0.02□□□□□ -2.41
USF3Q68DE3 AC010153.1-201ENST00000432862 727 ntBASIC0.02□□□□□ -2.41
USF3Q68DE3 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.02□□□□□ -2.41
USF3Q68DE3 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC0.02□□□□□ -2.41
USF3Q68DE3 MTND2P33-201ENST00000506452 1031 ntBASIC0.02□□□□□ -2.41
USF3Q68DE3 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.02□□□□□ -2.41
USF3Q68DE3 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC0.02□□□□□ -2.41
USF3Q68DE3 RNU6-714P-201ENST00000516963 103 ntBASIC0.02□□□□□ -2.41
USF3Q68DE3 SNORA31.19-201ENST00000517079 126 ntBASIC0.02□□□□□ -2.41
USF3Q68DE3 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC0.02□□□□□ -2.41
USF3Q68DE3 AC096720.1-201ENST00000604441 183 ntBASIC0.02□□□□□ -2.41
USF3Q68DE3 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC0.02□□□□□ -2.41
USF3Q68DE3 MIR1248-201ENST00000629190 106 ntBASIC0.02□□□□□ -2.41
USF3Q68DE3 AC100810.6-201ENST00000638068 285 ntBASIC0.02□□□□□ -2.41
USF3Q68DE3 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.01□□□□□ -2.41
USF3Q68DE3 AC010615.1-201ENST00000594254 1764 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 SNORD114-16-201ENST00000363044 70 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 SNORA63D-201ENST00000364359 132 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC0.01□□□□□ -2.41
USF3Q68DE3 AL359704.1-201ENST00000411586 781 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 COX6CP10-201ENST00000416832 224 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC0.01□□□□□ -2.41
USF3Q68DE3 RAC1P6-201ENST00000423911 575 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.01□□□□□ -2.41
USF3Q68DE3 MTCYBP1-201ENST00000454315 1119 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 RPL23AP54-201ENST00000495129 419 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 RNU6-390P-201ENST00000516259 103 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 AC109810.1-201ENST00000534066 224 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC0.01□□□□□ -2.41
USF3Q68DE3 MIR4768-201ENST00000585270 74 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 GHRLOS.1-201ENST00000610995 70 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 Pinc.1-201ENST00000616452 154 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 Y_RNA.99-201ENST00000363138 105 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 RNU4-73P-201ENST00000363164 141 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 Y_RNA.170-201ENST00000363746 110 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 CETN4P-201ENST00000432407 469 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.01□□□□□ -2.41
USF3Q68DE3 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC0.01□□□□□ -2.41
USF3Q68DE3 AL031313.1-201ENST00000448435 256 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 AC233266.1-201ENST00000454518 96 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 snoU13.14-201ENST00000459372 104 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.01□□□□□ -2.41
USF3Q68DE3 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.01□□□□□ -2.41
USF3Q68DE3 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC0.01□□□□□ -2.41
USF3Q68DE3 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.01□□□□□ -2.41
USF3Q68DE3 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC0.01□□□□□ -2.41
USF3Q68DE3 AP001180.6-201ENST00000584918 159 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 AC242852.1-201ENST00000612151 96 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 uc_338.34-201ENST00000617467 174 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 7SK.10-201ENST00000621414 298 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 AC244015.1-201ENST00000622301 99 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 AC019226.1-201ENST00000625666 515 ntBASIC0.01□□□□□ -2.41
USF3Q68DE3 SNORD95.1-201ENST00000364099 68 ntBASIC0□□□□□ -2.41
USF3Q68DE3 MIR548B-201ENST00000385247 97 ntBASIC0□□□□□ -2.41
USF3Q68DE3 RAC1P8-201ENST00000427086 527 ntBASIC0□□□□□ -2.41
USF3Q68DE3 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0□□□□□ -2.41
USF3Q68DE3 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0□□□□□ -2.41
USF3Q68DE3 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC0□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms