Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.49□□□□□ -1.85
USP39Q53GS9 RNU6-579P-201ENST00000516879 102 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 RNU6-612P-201ENST00000516909 102 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 RNU6-143P-201ENST00000516942 93 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 SCARNA24.2-201ENST00000516968 130 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 AC022868.1-201ENST00000517767 391 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.49□□□□□ -1.85
USP39Q53GS9 AC025755.1-201ENST00000521306 278 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC3.49□□□□□ -1.85
USP39Q53GS9 AC104581.2-201ENST00000572227 430 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 SNORD84-203ENST00000584275 78 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.49□□□□□ -1.85
USP39Q53GS9 U2.14-201ENST00000615943 113 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 AC132825.6-201ENST00000638861 357 ntBASIC3.49□□□□□ -1.85
USP39Q53GS9 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
USP39Q53GS9 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
USP39Q53GS9 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.49□□□□□ -1.85
USP39Q53GS9 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
USP39Q53GS9 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
USP39Q53GS9 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
USP39Q53GS9 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
USP39Q53GS9 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.48□□□□□ -1.85
USP39Q53GS9 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP39Q53GS9 AC110774.1-201ENST00000623567 2018 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 MIR412-201ENST00000362142 91 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 Y_RNA.199-201ENST00000364014 102 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 RNU6-378P-201ENST00000384324 107 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 RNU6-102P-201ENST00000384485 104 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 AL079342.1-201ENST00000401460 267 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 YPEL5P1-201ENST00000419731 367 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 MTCO1P39-201ENST00000426148 480 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 AC079780.1-201ENST00000428259 207 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.48□□□□□ -1.85
USP39Q53GS9 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.48□□□□□ -1.85
USP39Q53GS9 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.48□□□□□ -1.85
USP39Q53GS9 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.48□□□□□ -1.85
USP39Q53GS9 PHBP14-201ENST00000512887 367 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 AC010265.1-201ENST00000513509 211 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.48□□□□□ -1.85
USP39Q53GS9 RNU6-496P-201ENST00000516145 99 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 RNU6-1012P-201ENST00000516606 109 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 AP006245.1-201ENST00000522549 120 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
USP39Q53GS9 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.48□□□□□ -1.85
USP39Q53GS9 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 AC005046.1-201ENST00000608515 625 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 AL161629.2-201ENST00000615347 275 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.48□□□□□ -1.85
USP39Q53GS9 AC092628.2-201ENST00000622492 339 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.48□□□□□ -1.85
USP39Q53GS9 AC007656.2-201ENST00000624902 4547 ntBASIC3.48□□□□□ -1.85
USP39Q53GS9 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.48□□□□□ -1.85
USP39Q53GS9 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.48□□□□□ -1.85
USP39Q53GS9 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP39Q53GS9 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
USP39Q53GS9 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.47□□□□□ -1.85
USP39Q53GS9 RNU6-428P-201ENST00000362942 107 ntBASIC3.47□□□□□ -1.85
USP39Q53GS9 Y_RNA.500-201ENST00000384466 111 ntBASIC3.47□□□□□ -1.85
USP39Q53GS9 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.47□□□□□ -1.85
USP39Q53GS9 AC017079.2-201ENST00000416102 485 ntBASIC3.47□□□□□ -1.85
USP39Q53GS9 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.47□□□□□ -1.85
USP39Q53GS9 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.47□□□□□ -1.85
USP39Q53GS9 FABP5P15-201ENST00000453566 214 ntBASIC3.47□□□□□ -1.85
USP39Q53GS9 AC084357.1-201ENST00000473404 255 ntBASIC3.47□□□□□ -1.85
USP39Q53GS9 RN7SL504P-201ENST00000494496 287 ntBASIC3.47□□□□□ -1.85
USP39Q53GS9 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.47□□□□□ -1.85
USP39Q53GS9 SERF1AP1-201ENST00000514575 187 ntBASIC3.47□□□□□ -1.85
USP39Q53GS9 AP002392.1-201ENST00000537692 208 ntBASIC3.47□□□□□ -1.85
USP39Q53GS9 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.47□□□□□ -1.85
USP39Q53GS9 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.47□□□□□ -1.85
USP39Q53GS9 RNVU1-4-201ENST00000612985 164 ntBASIC3.47□□□□□ -1.85
USP39Q53GS9 AL162274.2-201ENST00000614406 332 ntBASIC3.47□□□□□ -1.85
USP39Q53GS9 AC240442.1-201ENST00000616055 283 ntBASIC3.47□□□□□ -1.85
USP39Q53GS9 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.47□□□□□ -1.85
USP39Q53GS9 AC090617.7-201ENST00000623952 126 ntBASIC3.47□□□□□ -1.85
USP39Q53GS9 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
USP39Q53GS9 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
USP39Q53GS9 SDAD1P2-201ENST00000441308 2028 ntBASIC3.47□□□□□ -1.85
USP39Q53GS9 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.47□□□□□ -1.85
USP39Q53GS9 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
USP39Q53GS9 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.46□□□□□ -1.85
USP39Q53GS9 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
USP39Q53GS9 OR4G2P-202ENST00000641004 1759 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
USP39Q53GS9 SNORD113-8-201ENST00000363497 74 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 RNU6-937P-201ENST00000384325 106 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 MIR514A1-201ENST00000385133 98 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 Y_RNA.602-201ENST00000410535 92 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 RN7SKP53-201ENST00000411337 315 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.46□□□□□ -1.86
USP39Q53GS9 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.46□□□□□ -1.86
USP39Q53GS9 AL445305.1-201ENST00000432577 575 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 HSPE1P25-201ENST00000455484 251 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 AL049874.1-201ENST00000489560 388 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 AC074198.2-201ENST00000508153 258 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 SNORA25.14-201ENST00000516481 132 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.46□□□□□ -1.86
USP39Q53GS9 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 AC091144.1-201ENST00000519573 138 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 AC087441.2-201ENST00000529141 262 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms