Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 RPS4XP2-201ENST00000458402 793 ntBASIC3.69□□□□□ -1.82
NKX3-2P78367 RN7SKP272-201ENST00000516988 232 ntBASIC3.69□□□□□ -1.82
NKX3-2P78367 CASP1P1-201ENST00000526345 212 ntBASIC3.69□□□□□ -1.82
NKX3-2P78367 AC010186.2-204ENST00000537668 439 ntBASIC3.69□□□□□ -1.82
NKX3-2P78367 AC023824.2-201ENST00000566185 400 ntBASIC3.69□□□□□ -1.82
NKX3-2P78367 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.69□□□□□ -1.82
NKX3-2P78367 AL033523.1-201ENST00000605153 153 ntBASIC3.69□□□□□ -1.82
NKX3-2P78367 AC011476.5-201ENST00000615594 130 ntBASIC3.69□□□□□ -1.82
NKX3-2P78367 AL450472.1-202ENST00000637286 180 ntBASIC3.69□□□□□ -1.82
NKX3-2P78367 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
NKX3-2P78367 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
NKX3-2P78367 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
NKX3-2P78367 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
NKX3-2P78367 AC006504.1-201ENST00000562493 3666 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 AC009541.1-201ENST00000438279 2662 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
NKX3-2P78367 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.68□□□□□ -1.82
NKX3-2P78367 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.68□□□□□ -1.82
NKX3-2P78367 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.68□□□□□ -1.82
NKX3-2P78367 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.68□□□□□ -1.82
NKX3-2P78367 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
NKX3-2P78367 MIR335-201ENST00000362173 94 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 RNA5SP295-201ENST00000362655 121 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 RNU6-527P-201ENST00000363425 104 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 RNU6-898P-201ENST00000365627 104 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 SNORA7.4-201ENST00000384249 137 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 RNU6-658P-201ENST00000384606 106 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 MIR518D-201ENST00000385014 87 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 RNU6-1197P-201ENST00000391183 107 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 AL079342.1-201ENST00000401460 267 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 BX679664.1-201ENST00000434429 253 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 snoU13.30-201ENST00000458951 104 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 RPL21P104-201ENST00000464143 478 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 UBE2DNL-203ENST00000474922 222 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 RPL23AP94-201ENST00000512518 302 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 RNU6-1231P-201ENST00000517185 103 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.68□□□□□ -1.82
NKX3-2P78367 AC130289.1-201ENST00000577321 73 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.68□□□□□ -1.82
NKX3-2P78367 AC009779.6-201ENST00000603972 165 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.68□□□□□ -1.82
NKX3-2P78367 AC098479.1-201ENST00000609225 154 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 CENPF-206ENST00000614578 528 ntTSL 5 BASIC3.68□□□□□ -1.82
NKX3-2P78367 AC018692.3-201ENST00000623929 123 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
NKX3-2P78367 AC233981.2-201ENST00000611524 1614 ntBASIC3.68□□□□□ -1.82
NKX3-2P78367 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.68□□□□□ -1.82
NKX3-2P78367 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.68□□□□□ -1.82
NKX3-2P78367 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
NKX3-2P78367 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.68□□□□□ -1.82
NKX3-2P78367 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
NKX3-2P78367 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
NKX3-2P78367 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-2P78367 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-2P78367 LINC02555-201ENST00000563933 1951 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-2P78367 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-2P78367 Y_RNA.54-201ENST00000362766 105 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 MIR607-201ENST00000385241 96 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 MRPL35P1-201ENST00000404272 572 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 COTL1P1-201ENST00000422309 375 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 AL512844.2-201ENST00000433990 593 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 AC098831.1-201ENST00000440661 216 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 AL031659.1-201ENST00000447075 539 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.67□□□□□ -1.82
NKX3-2P78367 RPL30P1-201ENST00000488676 339 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 RPL23AP75-201ENST00000491601 451 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 RPL23AP49-201ENST00000492925 468 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 AC091874.1-201ENST00000511402 339 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 RNU6-1338P-201ENST00000516328 91 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 SNORA70.19-201ENST00000516717 90 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 AC022868.1-201ENST00000517767 391 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-2P78367 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.67□□□□□ -1.82
NKX3-2P78367 AC090617.3-201ENST00000573670 475 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 AC020895.1-201ENST00000595362 272 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 AC024153.1-201ENST00000603103 365 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 FTX_3.1-201ENST00000610451 147 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 AC240442.1-201ENST00000616055 283 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.67□□□□□ -1.82
NKX3-2P78367 U2.21-201ENST00000637295 81 ntBASIC3.67□□□□□ -1.82
NKX3-2P78367 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-2P78367 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
NKX3-2P78367 RNU6-600P-201ENST00000362524 99 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 RNU6-1301P-201ENST00000362724 104 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 Y_RNA.65-201ENST00000362846 100 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 RNU6-942P-201ENST00000363002 107 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 Y_RNA.277-201ENST00000364754 102 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 RNU4-9P-201ENST00000364951 139 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
NKX3-2P78367 RNU6-937P-201ENST00000384325 106 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 Y_RNA.541-201ENST00000384640 113 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 AP000567.1-201ENST00000406413 156 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 PIGPP3-201ENST00000425307 415 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 AC009296.1-201ENST00000443146 155 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 RN7SL863P-201ENST00000462370 296 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 RPS4XP13-201ENST00000483219 789 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 RNU6-1012P-201ENST00000516606 109 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 MIR2355-201ENST00000517199 87 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 RRN3P3-201ENST00000549207 578 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms