Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.98□□□□□ -2.09
COL4A4P53420 MTCO3P10-201ENST00000455912 772 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 RNU6-1208P-201ENST00000459588 107 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 AC010683.1-201ENST00000473673 378 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
COL4A4P53420 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.98□□□□□ -2.09
COL4A4P53420 MTCYBP40-201ENST00000509390 1135 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 RPL39P5-202ENST00000512505 151 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 RNU6-250P-201ENST00000516958 103 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 RNA5SP454-201ENST00000517231 127 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 RN7SKP295-201ENST00000517264 153 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC1.98□□□□□ -2.09
COL4A4P53420 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC1.98□□□□□ -2.09
COL4A4P53420 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
COL4A4P53420 MIR4680-201ENST00000580906 66 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 AC105224.1-201ENST00000587055 421 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 AC092807.2-201ENST00000609367 243 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 uc_338.12-201ENST00000616344 181 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 AC048347.1-201ENST00000624621 427 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
COL4A4P53420 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC1.98□□□□□ -2.09
COL4A4P53420 AL138713.1-201ENST00000624026 2130 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
COL4A4P53420 AC009902.3-201ENST00000606235 2172 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
COL4A4P53420 SNORA63.7-201ENST00000365579 123 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 Y_RNA.482-201ENST00000384377 111 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 MIR19A-201ENST00000384878 82 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 U3.20-201ENST00000390909 217 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 AC019129.1-201ENST00000403786 261 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 MIR1323-201ENST00000408090 73 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.97□□□□□ -2.09
COL4A4P53420 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC1.97□□□□□ -2.09
COL4A4P53420 SNRPEP4-201ENST00000435815 279 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.97□□□□□ -2.09
COL4A4P53420 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.97□□□□□ -2.09
COL4A4P53420 SNRPFP3-201ENST00000457792 225 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 HMGB3P30-201ENST00000457863 606 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 RPS29P12-201ENST00000460178 152 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.97□□□□□ -2.09
COL4A4P53420 AC104564.1-201ENST00000493028 407 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC1.97□□□□□ -2.09
COL4A4P53420 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.97□□□□□ -2.09
COL4A4P53420 AC104057.1-201ENST00000515547 497 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 SNORD27.1-201ENST00000516319 72 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 SCARNA24.1-201ENST00000516465 137 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 RNU6-1038P-201ENST00000516516 104 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 RNU6-635P-201ENST00000516651 102 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC1.97□□□□□ -2.09
COL4A4P53420 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.97□□□□□ -2.09
COL4A4P53420 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.97□□□□□ -2.09
COL4A4P53420 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.97□□□□□ -2.09
COL4A4P53420 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC1.97□□□□□ -2.09
COL4A4P53420 HMGN2P28-201ENST00000606102 262 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 AC022893.3-201ENST00000607665 437 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 AC022418.1-201ENST00000624118 445 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 AL049641.1-201ENST00000441055 1948 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 AC233981.2-201ENST00000611524 1614 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
COL4A4P53420 AC130650.2-201ENST00000618736 2403 ntBASIC1.97□□□□□ -2.09
COL4A4P53420 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
COL4A4P53420 Y_RNA.22-201ENST00000362492 102 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 RNA5SP258-201ENST00000362750 119 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 RNU6-238P-201ENST00000363313 106 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 RNU6-392P-201ENST00000364926 101 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 RNU6-61P-201ENST00000365528 109 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC117470.1-201ENST00000381974 330 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 RNU6-39P-201ENST00000384344 107 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 RNU6-1297P-201ENST00000384415 104 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 RNU1-57P-201ENST00000384491 166 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 RNU6-1222P-201ENST00000384615 107 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 Y_RNA.645-201ENST00000391229 102 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 MIR548F4-201ENST00000408515 105 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 RNU6-370P-201ENST00000411008 104 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 EIF1AXP1-201ENST00000419267 435 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 Z82209.1-201ENST00000422141 2135 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 PSMA6P3-201ENST00000428242 164 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 MTCO3P45-201ENST00000443036 613 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.96□□□□□ -2.1
COL4A4P53420 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.96□□□□□ -2.1
COL4A4P53420 MTND1P9-201ENST00000453775 944 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.96□□□□□ -2.1
COL4A4P53420 RPL30P15-201ENST00000457129 321 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.96□□□□□ -2.1
COL4A4P53420 AC097473.1-201ENST00000508142 408 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.96□□□□□ -2.1
COL4A4P53420 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AL161713.1-201ENST00000555538 145 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AL118558.2-201ENST00000556294 238 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 MTCO3P23-201ENST00000561363 289 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.96□□□□□ -2.1
COL4A4P53420 MIR3941-201ENST00000582572 103 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC1.96□□□□□ -2.1
COL4A4P53420 UBE2L4-201ENST00000587688 464 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC1.96□□□□□ -2.1
COL4A4P53420 AC012409.4-201ENST00000612923 249 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC133104.2-201ENST00000615272 193 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC091925.1-201ENST00000623204 462 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 120.6 ms