Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RPL39P29-201ENST00000447779 157 ntBASIC1.74□□□□□ -2.13
SHMT2P34897 AC013470.1-201ENST00000453438 462 ntBASIC1.74□□□□□ -2.13
SHMT2P34897 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.74□□□□□ -2.13
SHMT2P34897 RNU7-63P-201ENST00000459054 62 ntBASIC1.74□□□□□ -2.13
SHMT2P34897 RPL30P1-201ENST00000488676 339 ntBASIC1.74□□□□□ -2.13
SHMT2P34897 RPL23AP63-201ENST00000498752 471 ntBASIC1.74□□□□□ -2.13
SHMT2P34897 AC091133.4-201ENST00000511142 308 ntBASIC1.74□□□□□ -2.13
SHMT2P34897 RN7SKP298-201ENST00000515950 94 ntBASIC1.74□□□□□ -2.13
SHMT2P34897 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.74□□□□□ -2.13
SHMT2P34897 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.74□□□□□ -2.13
SHMT2P34897 AC107953.1-201ENST00000522216 297 ntBASIC1.74□□□□□ -2.13
SHMT2P34897 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.74□□□□□ -2.13
SHMT2P34897 AP003392.2-201ENST00000527269 208 ntBASIC1.74□□□□□ -2.13
SHMT2P34897 AC022880.1-201ENST00000534017 973 ntBASIC1.74□□□□□ -2.13
SHMT2P34897 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.74□□□□□ -2.13
SHMT2P34897 AP000763.2-201ENST00000540641 163 ntBASIC1.74□□□□□ -2.13
SHMT2P34897 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.74□□□□□ -2.13
SHMT2P34897 AP005136.1-201ENST00000579765 429 ntBASIC1.74□□□□□ -2.13
SHMT2P34897 AL031274.2-201ENST00000599419 203 ntBASIC1.74□□□□□ -2.13
SHMT2P34897 AL670379.2-201ENST00000604983 252 ntBASIC1.74□□□□□ -2.13
SHMT2P34897 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
SHMT2P34897 AC084768.2-201ENST00000622736 221 ntBASIC1.74□□□□□ -2.13
SHMT2P34897 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.74□□□□□ -2.13
SHMT2P34897 AC241585.2-209ENST00000638217 143 ntBASIC1.74□□□□□ -2.13
SHMT2P34897 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
SHMT2P34897 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
SHMT2P34897 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
SHMT2P34897 snoU2_19.1-201ENST00000362361 80 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 RNU6-527P-201ENST00000363425 104 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 Y_RNA.399-201ENST00000383955 105 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 RNU6-517P-201ENST00000384362 110 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.73□□□□□ -2.13
SHMT2P34897 AL117339.3-201ENST00000418733 162 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 AL353193.1-201ENST00000421444 268 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 USP9YP18-201ENST00000425912 695 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 AL591043.1-201ENST00000432461 424 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.73□□□□□ -2.13
SHMT2P34897 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.73□□□□□ -2.13
SHMT2P34897 AC073415.1-201ENST00000449240 153 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 RNU7-180P-201ENST00000459240 63 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 AC107032.1-201ENST00000485945 480 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 HMGB1P29-201ENST00000505659 499 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 AC108078.1-201ENST00000508073 725 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC1.73□□□□□ -2.13
SHMT2P34897 RNU6-667P-201ENST00000517186 102 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 MTND2P38-201ENST00000522536 667 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.73□□□□□ -2.13
SHMT2P34897 CYCSP27-201ENST00000527643 293 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 AL137161.1-201ENST00000532231 390 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 AC018630.3-201ENST00000542637 96 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC1.73□□□□□ -2.13
SHMT2P34897 HIF1AP1-201ENST00000553642 175 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 DEFB122-202ENST00000569013 197 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 MIR4529-201ENST00000578110 78 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.73□□□□□ -2.13
SHMT2P34897 MIR4287-201ENST00000579398 78 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 AC104073.3-201ENST00000610942 955 ntBASIC1.73□□□□□ -2.13
SHMT2P34897 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
SHMT2P34897 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.73□□□□□ -2.13
SHMT2P34897 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
SHMT2P34897 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
SHMT2P34897 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
SHMT2P34897 RNU6-428P-201ENST00000362942 107 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 RNU6-336P-201ENST00000364891 107 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 SNORD116-9-201ENST00000384000 95 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 SNORD116-3-201ENST00000384287 95 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 SNORD116-7-201ENST00000384404 95 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 SNORD116-5-201ENST00000384462 95 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 RNU6-1222P-201ENST00000384615 107 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 MIR544A-201ENST00000384855 91 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 MIR29B2-201ENST00000385055 81 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 DEFB108C-201ENST00000400154 252 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 RNU2-32P-201ENST00000411193 191 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 MTCYBP8-201ENST00000422855 651 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.72□□□□□ -2.13
SHMT2P34897 RPS15AP10-201ENST00000432472 382 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 AC243964.1-201ENST00000441814 261 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.72□□□□□ -2.13
SHMT2P34897 AL122001.1-201ENST00000457027 370 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.72□□□□□ -2.13
SHMT2P34897 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.72□□□□□ -2.13
SHMT2P34897 SNRPFP3-201ENST00000457792 225 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC1.72□□□□□ -2.13
SHMT2P34897 RPS29P11-201ENST00000496507 171 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 HMGB3P17-201ENST00000504195 649 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.72□□□□□ -2.13
SHMT2P34897 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 RNU6-548P-201ENST00000517083 115 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.72□□□□□ -2.13
SHMT2P34897 MIR3122-201ENST00000577243 73 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 AC010620.1-201ENST00000601088 1102 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.72□□□□□ -2.13
SHMT2P34897 RN7SKP299-201ENST00000606679 301 ntBASIC1.72□□□□□ -2.13
SHMT2P34897 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SHMT2P34897 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
SHMT2P34897 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.71□□□□□ -2.14
SHMT2P34897 RNU6-1285P-201ENST00000363480 105 ntBASIC1.71□□□□□ -2.14
SHMT2P34897 U3.13-201ENST00000364804 214 ntBASIC1.71□□□□□ -2.14
SHMT2P34897 RNU6-996P-201ENST00000365438 107 ntBASIC1.71□□□□□ -2.14
SHMT2P34897 RNU6-1119P-201ENST00000384349 108 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms