Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 RNU6-1245P-201ENST00000411130 106 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.72□□□□□ -1.97
SHMT1P34896 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.72□□□□□ -1.97
SHMT1P34896 AL513477.1-202ENST00000417061 214 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 PDCL2P1-201ENST00000419302 352 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 RPL7P37-201ENST00000425095 738 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 RPS15AP28-201ENST00000435088 386 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 AC004383.1-201ENST00000438135 289 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 RPS12P2-201ENST00000439728 269 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.72□□□□□ -1.97
SHMT1P34896 AC091951.2-201ENST00000500762 203 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 SEM1P1-201ENST00000506694 209 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 RNU6-875P-201ENST00000516488 106 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 RNU6-826P-201ENST00000516827 104 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 RNA5SP454-201ENST00000517231 127 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.72□□□□□ -1.97
SHMT1P34896 AC103996.1-201ENST00000555468 102 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 MIR4648-201ENST00000580107 72 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 AL121917.1-203ENST00000605534 577 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 MIR6715A-201ENST00000615929 79 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 AC104260.1-201ENST00000616660 539 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.72□□□□□ -1.97
SHMT1P34896 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.71□□□□□ -1.97
SHMT1P34896 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
SHMT1P34896 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.71□□□□□ -1.98
SHMT1P34896 SNORD56.1-201ENST00000362913 68 ntBASIC2.71□□□□□ -1.98
SHMT1P34896 RNU6-428P-201ENST00000362942 107 ntBASIC2.71□□□□□ -1.98
SHMT1P34896 Y_RNA.142-201ENST00000363491 102 ntBASIC2.71□□□□□ -1.98
SHMT1P34896 RNU6-336P-201ENST00000364891 107 ntBASIC2.71□□□□□ -1.98
SHMT1P34896 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
SHMT1P34896 RNU6-1083P-201ENST00000384022 107 ntBASIC2.71□□□□□ -1.98
SHMT1P34896 RNU6-1009P-201ENST00000390996 107 ntBASIC2.71□□□□□ -1.98
SHMT1P34896 RNA5SP390-201ENST00000410191 113 ntBASIC2.71□□□□□ -1.98
SHMT1P34896 Y_RNA.604-201ENST00000410574 102 ntBASIC2.71□□□□□ -1.98
SHMT1P34896 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.71□□□□□ -1.98
SHMT1P34896 Y_RNA.682-201ENST00000516457 100 ntBASIC2.71□□□□□ -1.98
SHMT1P34896 SNORA31.23-201ENST00000517219 133 ntBASIC2.71□□□□□ -1.98
SHMT1P34896 SCARNA11.3-201ENST00000517276 130 ntBASIC2.71□□□□□ -1.98
SHMT1P34896 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.71□□□□□ -1.98
SHMT1P34896 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.71□□□□□ -1.98
SHMT1P34896 BNIP3P16-201ENST00000589779 534 ntBASIC2.71□□□□□ -1.98
SHMT1P34896 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.71□□□□□ -1.98
SHMT1P34896 AC096772.1-201ENST00000609146 564 ntBASIC2.71□□□□□ -1.98
SHMT1P34896 AC063943.3-201ENST00000615562 356 ntBASIC2.71□□□□□ -1.98
SHMT1P34896 AC024581.2-201ENST00000619986 252 ntBASIC2.71□□□□□ -1.98
SHMT1P34896 AC244517.12-201ENST00000623581 663 ntBASIC2.71□□□□□ -1.98
SHMT1P34896 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.71□□□□□ -1.98
SHMT1P34896 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.71□□□□□ -1.98
SHMT1P34896 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SHMT1P34896 RBBP8P1-201ENST00000449447 1844 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 RNU6-1180P-201ENST00000364935 107 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 RNU6-867P-201ENST00000364956 107 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
SHMT1P34896 RNU6-293P-201ENST00000411259 106 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 DPH3P2-201ENST00000422618 250 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.7□□□□□ -1.98
SHMT1P34896 HMGB1P18-201ENST00000438801 619 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 AL353705.4-201ENST00000449661 238 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 AMD1P1-201ENST00000457220 922 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 AC130509.1-201ENST00000464158 433 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 AC008571.1-201ENST00000467232 300 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 RPS27AP9-201ENST00000477681 438 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 AC103851.1-201ENST00000506833 274 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 RPL39P5-202ENST00000512505 151 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.7□□□□□ -1.98
SHMT1P34896 MIR4790-201ENST00000577799 79 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 AC091135.1-201ENST00000585943 307 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 AC009314.1-201ENST00000603871 304 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.7□□□□□ -1.98
SHMT1P34896 AL133216.2-202ENST00000634512 349 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 TPTEP1-208ENST00000636884 213 ntBASIC2.7□□□□□ -1.98
SHMT1P34896 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.7□□□□□ -1.98
SHMT1P34896 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
SHMT1P34896 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
SHMT1P34896 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
SHMT1P34896 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
SHMT1P34896 RNU6-95P-201ENST00000384697 107 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 AL079342.1-201ENST00000401460 267 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 AL356432.1-201ENST00000405809 419 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 AL030996.1-201ENST00000411430 235 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 AC074085.1-201ENST00000413598 418 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.69□□□□□ -1.98
SHMT1P34896 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.69□□□□□ -1.98
SHMT1P34896 AC093019.1-201ENST00000443135 252 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 AC096638.1-201ENST00000444678 216 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 MTND1P17-201ENST00000448961 204 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.69□□□□□ -1.98
SHMT1P34896 snoU13.15-201ENST00000459407 104 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 U8.21-201ENST00000459536 136 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 AP001324.2-201ENST00000461163 319 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 AP001025.1-201ENST00000486139 332 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 GLYCAM1-201ENST00000546596 285 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 TRAV32-201ENST00000553993 340 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 AC243960.4-201ENST00000600532 288 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 AC104237.2-201ENST00000612456 443 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 FO624990.1-201ENST00000636373 85 ntBASIC2.69□□□□□ -1.98
SHMT1P34896 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.69□□□□□ -1.98
SHMT1P34896 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
SHMT1P34896 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
SHMT1P34896 AL109809.4-201ENST00000603520 2185 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 207.5 ms