Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.3□□□□□ -2.04
PCDHGA1Q9Y5H4 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.3□□□□□ -2.04
PCDHGA1Q9Y5H4 MIR6873-201ENST00000622788 63 ntBASIC2.3□□□□□ -2.04
PCDHGA1Q9Y5H4 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
PCDHGA1Q9Y5H4 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 RNU6-655P-201ENST00000362858 107 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 RNA5SP181-201ENST00000410246 98 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 RNU2-23P-201ENST00000410545 195 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 SNORD56-201ENST00000413522 71 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 MTCO3P38-201ENST00000468910 766 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 AC091435.1-201ENST00000505442 584 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 RNA5SP401-201ENST00000515920 127 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 RNU6-548P-201ENST00000517083 115 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 CKS1BP7-201ENST00000522230 235 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 AC022880.1-201ENST00000534017 973 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 AC090115.3-201ENST00000553218 849 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 HMGB1P33-201ENST00000563485 527 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 AC090897.2-201ENST00000581715 130 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 MIR5007-201ENST00000583098 95 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 AL713866.2-201ENST00000603579 219 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 AL670379.2-201ENST00000604983 252 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 AL137847.3-201ENST00000611521 109 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 MIR6840-201ENST00000611937 71 ntBASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.29□□□□□ -2.04
PCDHGA1Q9Y5H4 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 SNORD56.1-201ENST00000362913 68 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 RNU1-72P-201ENST00000362976 153 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 RNU6-82P-201ENST00000363970 107 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 RNU6-266P-201ENST00000364225 107 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 RNU6-38P-201ENST00000384085 107 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 RNU6-780P-201ENST00000391030 104 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 RNU6-648P-201ENST00000410190 107 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 RNU6-1140P-201ENST00000410517 106 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 AL591043.1-201ENST00000432461 424 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 RNU6-333P-201ENST00000459117 107 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 snoU13.14-201ENST00000459372 104 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 RPS27P27-201ENST00000498779 255 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 Y_RNA.655-201ENST00000515919 96 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 RNA5SP137-201ENST00000516833 135 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 AC109479.2-201ENST00000517842 174 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 IMMP1LP2-201ENST00000552954 492 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 OR11H5P-201ENST00000554039 926 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 APOOP1-201ENST00000604695 592 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 AC123912.5-201ENST00000605470 343 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 AF250324.2-201ENST00000608299 610 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 MTND5P6-201ENST00000422338 1798 ntBASIC2.28□□□□□ -2.04
PCDHGA1Q9Y5H4 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 RNU6-1210P-201ENST00000363775 107 ntBASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 SNORA41-201ENST00000384675 132 ntBASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 SNORD37.1-201ENST00000390968 65 ntBASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 RNA5SP210-201ENST00000391034 120 ntBASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 AIMP1P2-201ENST00000425294 312 ntBASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 AL121601.2-201ENST00000438019 707 ntBASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 AC007969.2-201ENST00000441891 191 ntBASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 RPL23AP42-201ENST00000471152 471 ntBASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 AC091885.1-201ENST00000506658 268 ntBASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 RNU6-377P-201ENST00000515965 102 ntBASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 RNU6-314P-201ENST00000516574 104 ntBASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 RNA5SP402-201ENST00000517148 110 ntBASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 CYCSP27-201ENST00000527643 293 ntBASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 AC026271.5-201ENST00000577873 130 ntBASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
PCDHGA1Q9Y5H4 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.26□□□□□ -2.05
PCDHGA1Q9Y5H4 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.26□□□□□ -2.05
PCDHGA1Q9Y5H4 RNU6-527P-201ENST00000363425 104 ntBASIC2.26□□□□□ -2.05
PCDHGA1Q9Y5H4 SNORA16B-201ENST00000364674 135 ntBASIC2.26□□□□□ -2.05
PCDHGA1Q9Y5H4 Y_RNA.372-201ENST00000365599 102 ntBASIC2.26□□□□□ -2.05
PCDHGA1Q9Y5H4 RNU6-483P-201ENST00000384088 108 ntBASIC2.26□□□□□ -2.05
PCDHGA1Q9Y5H4 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
PCDHGA1Q9Y5H4 CBX3P9-201ENST00000402326 552 ntBASIC2.26□□□□□ -2.05
PCDHGA1Q9Y5H4 RNU6-1245P-201ENST00000411130 106 ntBASIC2.26□□□□□ -2.05
PCDHGA1Q9Y5H4 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.26□□□□□ -2.05
PCDHGA1Q9Y5H4 EDDM3CP-201ENST00000415977 425 ntBASIC2.26□□□□□ -2.05
PCDHGA1Q9Y5H4 AC008267.5-201ENST00000424928 265 ntBASIC2.26□□□□□ -2.05
PCDHGA1Q9Y5H4 AC013470.1-201ENST00000453438 462 ntBASIC2.26□□□□□ -2.05
PCDHGA1Q9Y5H4 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.26□□□□□ -2.05
PCDHGA1Q9Y5H4 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms