Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 Y_RNA.676-201ENST00000516393 96 ntBASIC2.12□□□□□ -2.07
LIME1Q9H400 RNA5SP281-201ENST00000516504 135 ntBASIC2.12□□□□□ -2.07
LIME1Q9H400 AC109329.1-201ENST00000518744 317 ntBASIC2.12□□□□□ -2.07
LIME1Q9H400 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.12□□□□□ -2.07
LIME1Q9H400 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.12□□□□□ -2.07
LIME1Q9H400 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC2.12□□□□□ -2.07
LIME1Q9H400 AC105245.1-201ENST00000581934 244 ntBASIC2.12□□□□□ -2.07
LIME1Q9H400 MIR3199-1-201ENST00000582434 88 ntBASIC2.12□□□□□ -2.07
LIME1Q9H400 BNIP3P16-201ENST00000589779 534 ntBASIC2.12□□□□□ -2.07
LIME1Q9H400 AC009314.1-201ENST00000603871 304 ntBASIC2.12□□□□□ -2.07
LIME1Q9H400 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.12□□□□□ -2.07
LIME1Q9H400 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.12□□□□□ -2.07
LIME1Q9H400 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.12□□□□□ -2.07
LIME1Q9H400 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.11□□□□□ -2.07
LIME1Q9H400 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
LIME1Q9H400 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
LIME1Q9H400 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
LIME1Q9H400 Y_RNA.100-201ENST00000363141 102 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 Y_RNA.238-201ENST00000364441 102 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 RNU1-91P-201ENST00000364746 163 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 RNU6-336P-201ENST00000364891 107 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 AL359511.1-201ENST00000402970 211 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 RNU2-23P-201ENST00000410545 195 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 Y_RNA.615-201ENST00000410769 117 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 RNU2-25P-201ENST00000411041 191 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.11□□□□□ -2.07
LIME1Q9H400 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.11□□□□□ -2.07
LIME1Q9H400 CYCSP48-201ENST00000417124 323 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 AC097463.2-201ENST00000421074 142 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 RPS12P2-201ENST00000439728 269 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 AL445687.1-201ENST00000439946 251 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
LIME1Q9H400 RPL7P12-201ENST00000446719 750 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.11□□□□□ -2.07
LIME1Q9H400 AP000852.1-201ENST00000472460 573 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 RPL36AP48-201ENST00000485521 314 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 RPL22P13-201ENST00000493291 347 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 AC023141.11-201ENST00000508864 202 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 FAM206BP-201ENST00000510179 541 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 RPPH1-2P-201ENST00000516688 293 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 AC087854.1-201ENST00000519706 414 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.11□□□□□ -2.07
LIME1Q9H400 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.11□□□□□ -2.07
LIME1Q9H400 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.11□□□□□ -2.07
LIME1Q9H400 MIR5194-201ENST00000582634 120 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 MIR3117-201ENST00000584034 78 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 AC107304.1-201ENST00000604229 296 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 RNU6-85P-201ENST00000605989 107 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 AC096772.1-201ENST00000609146 564 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.11□□□□□ -2.07
LIME1Q9H400 AL121757.2-201ENST00000611223 313 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.11□□□□□ -2.07
LIME1Q9H400 AC002553.4-201ENST00000616896 331 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 AL159153.1-201ENST00000619688 317 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 AC006504.8-201ENST00000621046 635 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 MIR3662-201ENST00000637030 95 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
LIME1Q9H400 Z75746.1-201ENST00000440243 2080 ntBASIC2.11□□□□□ -2.07
LIME1Q9H400 MTND4P27-201ENST00000450813 1354 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.1□□□□□ -2.07
LIME1Q9H400 SNORD114-1-201ENST00000362705 72 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 Y_RNA.530-201ENST00000384587 101 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
LIME1Q9H400 AL133475.1-201ENST00000404414 305 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 RNU6-1140P-201ENST00000410517 106 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.1□□□□□ -2.07
LIME1Q9H400 AL356320.1-201ENST00000429616 163 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.1□□□□□ -2.07
LIME1Q9H400 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.1□□□□□ -2.07
LIME1Q9H400 AL359672.1-201ENST00000442302 409 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 MTCO2P3-201ENST00000442543 421 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC2.1□□□□□ -2.07
LIME1Q9H400 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.1□□□□□ -2.07
LIME1Q9H400 AC083904.1-201ENST00000487828 231 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 AC008526.1-201ENST00000509149 338 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 RNU6-377P-201ENST00000515965 102 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 SNORA31.18-201ENST00000517043 134 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 RNA5SP402-201ENST00000517148 110 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.1□□□□□ -2.07
LIME1Q9H400 AC021269.2-201ENST00000532318 330 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.1□□□□□ -2.07
LIME1Q9H400 CTHRC1P1-201ENST00000605383 469 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 AC090617.10-201ENST00000624308 134 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
LIME1Q9H400 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.1□□□□□ -2.07
LIME1Q9H400 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.09□□□□□ -2.07
LIME1Q9H400 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
LIME1Q9H400 MTND5P6-201ENST00000422338 1798 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 SNORD56.1-201ENST00000362913 68 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 RNU6-428P-201ENST00000362942 107 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 RNU6-827P-201ENST00000365553 106 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 RNU6-332P-201ENST00000391193 108 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 AL079342.1-201ENST00000401460 267 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 AL162578.1-201ENST00000406202 378 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 RNU6-1148P-201ENST00000410992 104 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 EIF4EP4-201ENST00000424916 578 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 SNAP23P1-201ENST00000433229 246 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 NDUFA5P4-201ENST00000436704 385 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 AC096638.1-201ENST00000444678 216 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 253.3 ms