Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
TRERF1Q96PN7 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
TRERF1Q96PN7 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
TRERF1Q96PN7 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
TRERF1Q96PN7 AC068700.1-201ENST00000565862 3754 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 SNORD35B-201ENST00000363660 87 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 RNU6-270P-201ENST00000364131 105 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 SNORA62.3-201ENST00000365110 153 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 RNU6-1199P-201ENST00000411249 104 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.64□□□□□ -1.67
TRERF1Q96PN7 AC010095.1-201ENST00000443543 144 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 AL078601.1-201ENST00000444542 271 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 RPS20P10-201ENST00000451209 253 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 RNU6-1256P-201ENST00000516539 103 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 Y_RNA.709-201ENST00000516952 92 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.64□□□□□ -1.67
TRERF1Q96PN7 AL360157.1-201ENST00000565962 87 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 SNRPGP15-201ENST00000600149 222 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC4.64□□□□□ -1.67
TRERF1Q96PN7 MIR92B-201ENST00000607575 96 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 AC011603.4-201ENST00000611325 277 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 MIR7702-201ENST00000621931 59 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.64□□□□□ -1.67
TRERF1Q96PN7 SNORA43.4-201ENST00000629559 138 ntBASIC4.64□□□□□ -1.67
TRERF1Q96PN7 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
TRERF1Q96PN7 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
TRERF1Q96PN7 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
TRERF1Q96PN7 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
TRERF1Q96PN7 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
TRERF1Q96PN7 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.64□□□□□ -1.67
TRERF1Q96PN7 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 Y_RNA.245-201ENST00000364493 95 ntBASIC4.63□□□□□ -1.67
TRERF1Q96PN7 RNU6-476P-201ENST00000384726 107 ntBASIC4.63□□□□□ -1.67
TRERF1Q96PN7 RNU6-578P-201ENST00000390980 103 ntBASIC4.63□□□□□ -1.67
TRERF1Q96PN7 EIF1AXP1-201ENST00000419267 435 ntBASIC4.63□□□□□ -1.67
TRERF1Q96PN7 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 U8.19-201ENST00000459095 133 ntBASIC4.63□□□□□ -1.67
TRERF1Q96PN7 HMGB1P22-201ENST00000505315 124 ntBASIC4.63□□□□□ -1.67
TRERF1Q96PN7 RAC1P5-201ENST00000512182 576 ntBASIC4.63□□□□□ -1.67
TRERF1Q96PN7 AC107027.2-201ENST00000512197 115 ntBASIC4.63□□□□□ -1.67
TRERF1Q96PN7 TUG1_4.1-201ENST00000619464 181 ntBASIC4.63□□□□□ -1.67
TRERF1Q96PN7 AL354798.1-201ENST00000622505 329 ntBASIC4.63□□□□□ -1.67
TRERF1Q96PN7 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
TRERF1Q96PN7 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
TRERF1Q96PN7 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.62□□□□□ -1.67
TRERF1Q96PN7 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.62□□□□□ -1.67
TRERF1Q96PN7 AL592437.2-201ENST00000421655 2434 ntBASIC4.62□□□□□ -1.67
TRERF1Q96PN7 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.62□□□□□ -1.67
TRERF1Q96PN7 RNU6-527P-201ENST00000363425 104 ntBASIC4.62□□□□□ -1.67
TRERF1Q96PN7 snoU2_19.4-201ENST00000364329 80 ntBASIC4.62□□□□□ -1.67
TRERF1Q96PN7 RNU6-755P-201ENST00000364400 103 ntBASIC4.62□□□□□ -1.67
TRERF1Q96PN7 SNORA72.2-201ENST00000365028 127 ntBASIC4.62□□□□□ -1.67
TRERF1Q96PN7 RNU6-147P-201ENST00000383983 107 ntBASIC4.62□□□□□ -1.67
TRERF1Q96PN7 AL445584.1-201ENST00000431451 330 ntBASIC4.62□□□□□ -1.67
TRERF1Q96PN7 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.62□□□□□ -1.67
TRERF1Q96PN7 AC243964.1-201ENST00000441814 261 ntBASIC4.62□□□□□ -1.67
TRERF1Q96PN7 ANP32BP2-201ENST00000454525 545 ntBASIC4.62□□□□□ -1.67
TRERF1Q96PN7 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.62□□□□□ -1.67
TRERF1Q96PN7 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.62□□□□□ -1.67
TRERF1Q96PN7 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.62□□□□□ -1.67
TRERF1Q96PN7 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.62□□□□□ -1.67
TRERF1Q96PN7 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.62□□□□□ -1.67
TRERF1Q96PN7 AC090877.1-201ENST00000561418 344 ntBASIC4.62□□□□□ -1.67
TRERF1Q96PN7 AC069294.1-201ENST00000608397 350 ntBASIC4.62□□□□□ -1.67
TRERF1Q96PN7 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
TRERF1Q96PN7 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.62□□□□□ -1.67
TRERF1Q96PN7 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
TRERF1Q96PN7 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
TRERF1Q96PN7 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
TRERF1Q96PN7 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.61□□□□□ -1.67
TRERF1Q96PN7 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
TRERF1Q96PN7 RNU6-199P-201ENST00000362954 107 ntBASIC4.61□□□□□ -1.67
TRERF1Q96PN7 RNA5SP322-201ENST00000363617 119 ntBASIC4.61□□□□□ -1.67
TRERF1Q96PN7 RNU6-335P-201ENST00000364563 113 ntBASIC4.61□□□□□ -1.67
TRERF1Q96PN7 U3.15-201ENST00000365398 212 ntBASIC4.61□□□□□ -1.67
TRERF1Q96PN7 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
TRERF1Q96PN7 RNU1-89P-201ENST00000384592 164 ntBASIC4.61□□□□□ -1.67
TRERF1Q96PN7 RNU6-460P-201ENST00000391158 108 ntBASIC4.61□□□□□ -1.67
TRERF1Q96PN7 RNU6ATAC-201ENST00000408749 126 ntBASIC4.61□□□□□ -1.67
TRERF1Q96PN7 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC4.61□□□□□ -1.67
TRERF1Q96PN7 AC007919.1-201ENST00000429380 217 ntBASIC4.61□□□□□ -1.67
TRERF1Q96PN7 RPL23AP58-201ENST00000440453 469 ntBASIC4.61□□□□□ -1.67
TRERF1Q96PN7 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.61□□□□□ -1.67
TRERF1Q96PN7 RNA5SP290-201ENST00000517133 127 ntBASIC4.61□□□□□ -1.67
TRERF1Q96PN7 RNU6-844P-201ENST00000517175 102 ntBASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms