Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 Y_RNA.88-201ENST00000363029 99 ntBASIC1.87□□□□□ -2.11
SHHQ15465 RNY4P14-201ENST00000363656 96 ntBASIC1.87□□□□□ -2.11
SHHQ15465 RNU6-867P-201ENST00000364956 107 ntBASIC1.87□□□□□ -2.11
SHHQ15465 SNORD114-22-201ENST00000365423 72 ntBASIC1.87□□□□□ -2.11
SHHQ15465 SNORA24.1-201ENST00000384401 135 ntBASIC1.87□□□□□ -2.11
SHHQ15465 MRPL42P2-201ENST00000403169 426 ntBASIC1.87□□□□□ -2.11
SHHQ15465 RNU2-40P-201ENST00000410833 196 ntBASIC1.87□□□□□ -2.11
SHHQ15465 OR9R1P-201ENST00000412200 877 ntBASIC1.87□□□□□ -2.11
SHHQ15465 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
SHHQ15465 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.87□□□□□ -2.11
SHHQ15465 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.87□□□□□ -2.11
SHHQ15465 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.87□□□□□ -2.11
SHHQ15465 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.87□□□□□ -2.11
SHHQ15465 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC1.87□□□□□ -2.11
SHHQ15465 AL354685.2-201ENST00000448218 1447 ntBASIC1.87□□□□□ -2.11
SHHQ15465 MTND5P30-201ENST00000452896 1731 ntBASIC1.87□□□□□ -2.11
SHHQ15465 MTATP6P7-201ENST00000453315 681 ntBASIC1.87□□□□□ -2.11
SHHQ15465 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.87□□□□□ -2.11
SHHQ15465 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.87□□□□□ -2.11
SHHQ15465 MTCYBP18-201ENST00000501056 747 ntBASIC1.87□□□□□ -2.11
SHHQ15465 MTCO2P30-201ENST00000503662 364 ntBASIC1.87□□□□□ -2.11
SHHQ15465 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.87□□□□□ -2.11
SHHQ15465 AC112206.3-201ENST00000514578 389 ntBASIC1.87□□□□□ -2.11
SHHQ15465 SCARNA3-201ENST00000517097 143 ntBASIC1.87□□□□□ -2.11
SHHQ15465 RN7SKP258-201ENST00000517151 304 ntBASIC1.87□□□□□ -2.11
SHHQ15465 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.87□□□□□ -2.11
SHHQ15465 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC1.87□□□□□ -2.11
SHHQ15465 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.87□□□□□ -2.11
SHHQ15465 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
SHHQ15465 AP005435.4-201ENST00000529514 284 ntBASIC1.87□□□□□ -2.11
SHHQ15465 AC010186.2-204ENST00000537668 439 ntBASIC1.87□□□□□ -2.11
SHHQ15465 AL118558.2-201ENST00000556294 238 ntBASIC1.87□□□□□ -2.11
SHHQ15465 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.87□□□□□ -2.11
SHHQ15465 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.87□□□□□ -2.11
SHHQ15465 MIR5571-201ENST00000577998 113 ntBASIC1.87□□□□□ -2.11
SHHQ15465 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.87□□□□□ -2.11
SHHQ15465 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC1.87□□□□□ -2.11
SHHQ15465 AL355598.1-201ENST00000604169 202 ntBASIC1.87□□□□□ -2.11
SHHQ15465 AC017083.3-201ENST00000609955 700 ntBASIC1.87□□□□□ -2.11
SHHQ15465 AC012640.5-201ENST00000623897 319 ntBASIC1.87□□□□□ -2.11
SHHQ15465 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
SHHQ15465 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.86□□□□□ -2.11
SHHQ15465 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.86□□□□□ -2.11
SHHQ15465 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
SHHQ15465 CASC19-280ENST00000642102 1351 ntBASIC1.86□□□□□ -2.11
SHHQ15465 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.86□□□□□ -2.11
SHHQ15465 RNU6-1085P-201ENST00000363576 107 ntBASIC1.86□□□□□ -2.11
SHHQ15465 RNU5E-6P-201ENST00000365574 115 ntBASIC1.86□□□□□ -2.11
SHHQ15465 SNORA69-201ENST00000383895 132 ntBASIC1.86□□□□□ -2.11
SHHQ15465 MIR181A1-201ENST00000385026 110 ntBASIC1.86□□□□□ -2.11
SHHQ15465 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
SHHQ15465 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.86□□□□□ -2.11
SHHQ15465 Y_RNA.615-201ENST00000410769 117 ntBASIC1.86□□□□□ -2.11
SHHQ15465 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.86□□□□□ -2.11
SHHQ15465 RPL21P24-201ENST00000413752 448 ntBASIC1.86□□□□□ -2.11
SHHQ15465 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.86□□□□□ -2.11
SHHQ15465 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.86□□□□□ -2.11
SHHQ15465 AC007560.1-201ENST00000426912 237 ntBASIC1.86□□□□□ -2.11
SHHQ15465 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC1.86□□□□□ -2.11
SHHQ15465 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.86□□□□□ -2.11
SHHQ15465 AC000111.3-201ENST00000433478 193 ntBASIC1.86□□□□□ -2.11
SHHQ15465 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.86□□□□□ -2.11
SHHQ15465 AC016691.1-201ENST00000441321 413 ntBASIC1.86□□□□□ -2.11
SHHQ15465 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC1.86□□□□□ -2.11
SHHQ15465 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC1.86□□□□□ -2.11
SHHQ15465 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.86□□□□□ -2.11
SHHQ15465 AL021397.1-201ENST00000451806 248 ntBASIC1.86□□□□□ -2.11
SHHQ15465 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.86□□□□□ -2.11
SHHQ15465 RNU7-59P-201ENST00000459101 61 ntBASIC1.86□□□□□ -2.11
SHHQ15465 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
SHHQ15465 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.86□□□□□ -2.11
SHHQ15465 CCDC34P1-201ENST00000507441 517 ntBASIC1.86□□□□□ -2.11
SHHQ15465 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.86□□□□□ -2.11
SHHQ15465 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.86□□□□□ -2.11
SHHQ15465 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.86□□□□□ -2.11
SHHQ15465 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.86□□□□□ -2.11
SHHQ15465 SNORA31.3-201ENST00000516029 96 ntBASIC1.86□□□□□ -2.11
SHHQ15465 RNU6-1281P-201ENST00000516223 105 ntBASIC1.86□□□□□ -2.11
SHHQ15465 AP005902.1-201ENST00000521358 186 ntBASIC1.86□□□□□ -2.11
SHHQ15465 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.86□□□□□ -2.11
SHHQ15465 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC1.86□□□□□ -2.11
SHHQ15465 AC011604.1-201ENST00000545978 196 ntBASIC1.86□□□□□ -2.11
SHHQ15465 MIR548S-201ENST00000581352 82 ntBASIC1.86□□□□□ -2.11
SHHQ15465 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.86□□□□□ -2.11
SHHQ15465 AC007363.1-201ENST00000604736 620 ntBASIC1.86□□□□□ -2.11
SHHQ15465 AC009994.1-201ENST00000606889 253 ntBASIC1.86□□□□□ -2.11
SHHQ15465 AP001330.5-201ENST00000607176 411 ntBASIC1.86□□□□□ -2.11
SHHQ15465 AC008536.2-201ENST00000607284 349 ntBASIC1.86□□□□□ -2.11
SHHQ15465 MIR6779-201ENST00000617283 64 ntBASIC1.86□□□□□ -2.11
SHHQ15465 AL354950.2-201ENST00000617939 290 ntBASIC1.86□□□□□ -2.11
SHHQ15465 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.86□□□□□ -2.11
SHHQ15465 AC009161.2-201ENST00000624626 138 ntBASIC1.86□□□□□ -2.11
SHHQ15465 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.86□□□□□ -2.11
SHHQ15465 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.86□□□□□ -2.11
SHHQ15465 MIR3662-201ENST00000637030 95 ntBASIC1.86□□□□□ -2.11
SHHQ15465 MIR1321-201ENST00000637766 79 ntBASIC1.86□□□□□ -2.11
SHHQ15465 AC009487.4-201ENST00000624969 3585 ntBASIC1.86□□□□□ -2.11
SHHQ15465 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC1.85□□□□□ -2.11
SHHQ15465 HSPE1P11-201ENST00000339579 310 ntBASIC1.85□□□□□ -2.11
SHHQ15465 RNU6-288P-201ENST00000363690 104 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms