Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
MSX2P35548 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
MSX2P35548 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
MSX2P35548 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
MSX2P35548 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
MSX2P35548 Y_RNA.200-201ENST00000364018 102 ntBASIC3.37□□□□□ -1.87
MSX2P35548 SNORD115-32-201ENST00000364079 82 ntBASIC3.37□□□□□ -1.87
MSX2P35548 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.37□□□□□ -1.87
MSX2P35548 RNU6-968P-201ENST00000384076 107 ntBASIC3.37□□□□□ -1.87
MSX2P35548 RNU6-318P-201ENST00000384283 103 ntBASIC3.37□□□□□ -1.87
MSX2P35548 RNU1-13P-201ENST00000384499 162 ntBASIC3.37□□□□□ -1.87
MSX2P35548 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
MSX2P35548 RPL21P17-201ENST00000397467 475 ntBASIC3.37□□□□□ -1.87
MSX2P35548 EI24P2-201ENST00000397776 1076 ntBASIC3.37□□□□□ -1.87
MSX2P35548 U3.39-201ENST00000408569 239 ntBASIC3.37□□□□□ -1.87
MSX2P35548 RNA5SP317-201ENST00000410176 116 ntBASIC3.37□□□□□ -1.87
MSX2P35548 RNU6-1077P-201ENST00000410506 102 ntBASIC3.37□□□□□ -1.87
MSX2P35548 RNA5SP311-201ENST00000411290 116 ntBASIC3.37□□□□□ -1.87
MSX2P35548 AL139247.1-201ENST00000422768 325 ntBASIC3.37□□□□□ -1.87
MSX2P35548 AC098831.1-201ENST00000440661 216 ntBASIC3.37□□□□□ -1.87
MSX2P35548 AC243964.1-201ENST00000441814 261 ntBASIC3.37□□□□□ -1.87
MSX2P35548 AC006539.3-201ENST00000454258 129 ntBASIC3.37□□□□□ -1.87
MSX2P35548 HSPE1P25-201ENST00000455484 251 ntBASIC3.37□□□□□ -1.87
MSX2P35548 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.37□□□□□ -1.87
MSX2P35548 RPL32P34-201ENST00000486380 400 ntBASIC3.37□□□□□ -1.87
MSX2P35548 AF186996.7-201ENST00000492781 209 ntBASIC3.37□□□□□ -1.87
MSX2P35548 AC006445.2-201ENST00000510061 472 ntBASIC3.37□□□□□ -1.87
MSX2P35548 RNU2-27P-201ENST00000516185 142 ntBASIC3.37□□□□□ -1.87
MSX2P35548 RNA5SP315-201ENST00000516340 116 ntBASIC3.37□□□□□ -1.87
MSX2P35548 SCARNA24.2-201ENST00000516968 130 ntBASIC3.37□□□□□ -1.87
MSX2P35548 RNA5SP312-201ENST00000517068 116 ntBASIC3.37□□□□□ -1.87
MSX2P35548 AP004607.1-201ENST00000524456 203 ntBASIC3.37□□□□□ -1.87
MSX2P35548 H3F3AP1-201ENST00000559984 334 ntBASIC3.37□□□□□ -1.87
MSX2P35548 AC073657.2-201ENST00000605661 303 ntBASIC3.37□□□□□ -1.87
MSX2P35548 FTX_3.1-201ENST00000610451 147 ntBASIC3.37□□□□□ -1.87
MSX2P35548 RMST_6.1-201ENST00000611980 203 ntBASIC3.37□□□□□ -1.87
MSX2P35548 AL138880.2-201ENST00000616214 239 ntBASIC3.37□□□□□ -1.87
MSX2P35548 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
MSX2P35548 AC034229.5-201ENST00000624258 185 ntBASIC3.37□□□□□ -1.87
MSX2P35548 AC091903.1-201ENST00000624322 454 ntBASIC3.37□□□□□ -1.87
MSX2P35548 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.37□□□□□ -1.87
MSX2P35548 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
MSX2P35548 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.37□□□□□ -1.87
MSX2P35548 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
MSX2P35548 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.37□□□□□ -1.87
MSX2P35548 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
MSX2P35548 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.37□□□□□ -1.87
MSX2P35548 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
MSX2P35548 RNU1-35P-201ENST00000362782 153 ntBASIC3.36□□□□□ -1.87
MSX2P35548 RNU6-778P-201ENST00000363269 103 ntBASIC3.36□□□□□ -1.87
MSX2P35548 RNU6-527P-201ENST00000363425 104 ntBASIC3.36□□□□□ -1.87
MSX2P35548 Y_RNA.270-201ENST00000364693 104 ntBASIC3.36□□□□□ -1.87
MSX2P35548 RNU6-1286P-201ENST00000383871 107 ntBASIC3.36□□□□□ -1.87
MSX2P35548 RNU6-213P-201ENST00000384051 104 ntBASIC3.36□□□□□ -1.87
MSX2P35548 RNU6-217P-201ENST00000384164 104 ntBASIC3.36□□□□□ -1.87
MSX2P35548 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
MSX2P35548 MIR1298-201ENST00000408783 112 ntBASIC3.36□□□□□ -1.87
MSX2P35548 RNA5SP38-201ENST00000410750 119 ntBASIC3.36□□□□□ -1.87
MSX2P35548 RAB9AP3-201ENST00000412737 573 ntBASIC3.36□□□□□ -1.87
MSX2P35548 AC017079.2-201ENST00000416102 485 ntBASIC3.36□□□□□ -1.87
MSX2P35548 EIF1P2-201ENST00000428233 350 ntBASIC3.36□□□□□ -1.87
MSX2P35548 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.36□□□□□ -1.87
MSX2P35548 AC104332.1-201ENST00000440471 797 ntBASIC3.36□□□□□ -1.87
MSX2P35548 AL357552.1-201ENST00000445254 415 ntBASIC3.36□□□□□ -1.87
MSX2P35548 RAB9AP1-201ENST00000449393 573 ntBASIC3.36□□□□□ -1.87
MSX2P35548 MTATP6P7-201ENST00000453315 681 ntBASIC3.36□□□□□ -1.87
MSX2P35548 RN7SL323P-201ENST00000494712 295 ntBASIC3.36□□□□□ -1.87
MSX2P35548 AC091874.1-201ENST00000511402 339 ntBASIC3.36□□□□□ -1.87
MSX2P35548 SERF1AP1-201ENST00000514575 187 ntBASIC3.36□□□□□ -1.87
MSX2P35548 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
MSX2P35548 LINC00933-203ENST00000559812 219 ntBASIC3.36□□□□□ -1.87
MSX2P35548 MIR4429-201ENST00000580105 73 ntBASIC3.36□□□□□ -1.87
MSX2P35548 AC006111.3-201ENST00000622137 383 ntBASIC3.36□□□□□ -1.87
MSX2P35548 AC112484.5-201ENST00000624189 228 ntBASIC3.36□□□□□ -1.87
MSX2P35548 U2.22-201ENST00000636441 106 ntBASIC3.36□□□□□ -1.87
MSX2P35548 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
MSX2P35548 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
MSX2P35548 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.35□□□□□ -1.87
MSX2P35548 RNU1-75P-201ENST00000347264 129 ntBASIC3.35□□□□□ -1.87
MSX2P35548 RN7SKP280-201ENST00000364196 304 ntBASIC3.35□□□□□ -1.87
MSX2P35548 RNU6-290P-201ENST00000365212 101 ntBASIC3.35□□□□□ -1.87
MSX2P35548 RNA5SP283-201ENST00000365604 119 ntBASIC3.35□□□□□ -1.87
MSX2P35548 RNU6-898P-201ENST00000365627 104 ntBASIC3.35□□□□□ -1.87
MSX2P35548 SNORD63-201ENST00000384262 68 ntBASIC3.35□□□□□ -1.87
MSX2P35548 RNU1-139P-201ENST00000391307 165 ntBASIC3.35□□□□□ -1.87
MSX2P35548 SNORA3.3-201ENST00000408712 125 ntBASIC3.35□□□□□ -1.87
MSX2P35548 RN7SKP202-201ENST00000410439 330 ntBASIC3.35□□□□□ -1.87
MSX2P35548 AL512844.2-201ENST00000433990 593 ntBASIC3.35□□□□□ -1.87
MSX2P35548 AC124916.1-201ENST00000444020 547 ntBASIC3.35□□□□□ -1.87
MSX2P35548 AC016700.2-201ENST00000446011 156 ntBASIC3.35□□□□□ -1.87
MSX2P35548 AL353705.4-201ENST00000449661 238 ntBASIC3.35□□□□□ -1.87
MSX2P35548 AL138752.1-201ENST00000452964 351 ntBASIC3.35□□□□□ -1.87
MSX2P35548 RPL23AP49-201ENST00000492925 468 ntBASIC3.35□□□□□ -1.87
MSX2P35548 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC3.35□□□□□ -1.87
MSX2P35548 RNU1-103P-201ENST00000516502 125 ntBASIC3.35□□□□□ -1.87
MSX2P35548 RN7SKP272-201ENST00000516988 232 ntBASIC3.35□□□□□ -1.87
MSX2P35548 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
MSX2P35548 MDM2-232ENST00000544561 213 ntTSL 5 BASIC3.35□□□□□ -1.87
MSX2P35548 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.35□□□□□ -1.87
MSX2P35548 MIR3609-201ENST00000582661 80 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms