Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC134878.1-201ENST00000619901 243 ntBASIC4.9□□□□□ -1.63
COL9A1P20849 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL9A1P20849 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL9A1P20849 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL9A1P20849 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL9A1P20849 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL9A1P20849 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
COL9A1P20849 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL9A1P20849 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL9A1P20849 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL9A1P20849 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC4.89□□□□□ -1.63
COL9A1P20849 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC4.89□□□□□ -1.63
COL9A1P20849 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC4.89□□□□□ -1.63
COL9A1P20849 MIR133A2-201ENST00000347538 102 ntBASIC4.89□□□□□ -1.63
COL9A1P20849 RNU6-1305P-201ENST00000364353 104 ntBASIC4.89□□□□□ -1.63
COL9A1P20849 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.89□□□□□ -1.63
COL9A1P20849 CALM2P4-201ENST00000430810 426 ntBASIC4.89□□□□□ -1.63
COL9A1P20849 AL161651.1-201ENST00000440882 223 ntBASIC4.89□□□□□ -1.63
COL9A1P20849 RPS3P1-201ENST00000456781 192 ntBASIC4.89□□□□□ -1.63
COL9A1P20849 UBE2DNL-203ENST00000474922 222 ntBASIC4.89□□□□□ -1.63
COL9A1P20849 AL049873.1-201ENST00000480540 376 ntBASIC4.89□□□□□ -1.63
COL9A1P20849 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.89□□□□□ -1.63
COL9A1P20849 RPS29P20-201ENST00000489592 171 ntBASIC4.89□□□□□ -1.63
COL9A1P20849 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL9A1P20849 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC4.89□□□□□ -1.63
COL9A1P20849 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.89□□□□□ -1.63
COL9A1P20849 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL9A1P20849 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL9A1P20849 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC4.89□□□□□ -1.63
COL9A1P20849 MAPK10-349ENST00000641767 3661 ntBASIC4.88□□□□□ -1.63
COL9A1P20849 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL9A1P20849 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL9A1P20849 AC068254.2-201ENST00000623938 3577 ntBASIC4.88□□□□□ -1.63
COL9A1P20849 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL9A1P20849 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.88□□□□□ -1.63
COL9A1P20849 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.88□□□□□ -1.63
COL9A1P20849 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL9A1P20849 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC4.88□□□□□ -1.63
COL9A1P20849 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL9A1P20849 RNU6-529P-201ENST00000363383 104 ntBASIC4.88□□□□□ -1.63
COL9A1P20849 SNORA7.2-201ENST00000364446 145 ntBASIC4.88□□□□□ -1.63
COL9A1P20849 RNA5SP366-201ENST00000365454 123 ntBASIC4.88□□□□□ -1.63
COL9A1P20849 MIR3065-201ENST00000390137 79 ntBASIC4.88□□□□□ -1.63
COL9A1P20849 AL645608.4-201ENST00000423619 154 ntBASIC4.88□□□□□ -1.63
COL9A1P20849 HMGN2P20-201ENST00000437531 273 ntBASIC4.88□□□□□ -1.63
COL9A1P20849 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC4.88□□□□□ -1.63
COL9A1P20849 RN7SL810P-201ENST00000493031 276 ntBASIC4.88□□□□□ -1.63
COL9A1P20849 MIR4662B-201ENST00000579498 81 ntBASIC4.88□□□□□ -1.63
COL9A1P20849 MIR5195-201ENST00000583555 115 ntBASIC4.88□□□□□ -1.63
COL9A1P20849 MIR6715A-201ENST00000615929 79 ntBASIC4.88□□□□□ -1.63
COL9A1P20849 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
COL9A1P20849 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
COL9A1P20849 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL9A1P20849 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
COL9A1P20849 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.88□□□□□ -1.63
COL9A1P20849 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL9A1P20849 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC4.88□□□□□ -1.63
COL9A1P20849 AP002512.4-202ENST00000641599 4530 ntBASIC4.88□□□□□ -1.63
COL9A1P20849 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL9A1P20849 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL9A1P20849 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
COL9A1P20849 GVINP1-202ENST00000531871 7271 ntBASIC4.87□□□□□ -1.63
COL9A1P20849 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC4.87□□□□□ -1.63
COL9A1P20849 RNU6-592P-201ENST00000411333 103 ntBASIC4.87□□□□□ -1.63
COL9A1P20849 SNRPCP3-201ENST00000474888 476 ntBASIC4.87□□□□□ -1.63
COL9A1P20849 AC021205.2-201ENST00000480069 347 ntBASIC4.87□□□□□ -1.63
COL9A1P20849 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.87□□□□□ -1.63
COL9A1P20849 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.87□□□□□ -1.63
COL9A1P20849 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL9A1P20849 RPS15AP11-201ENST00000594193 385 ntBASIC4.87□□□□□ -1.63
COL9A1P20849 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.87□□□□□ -1.63
COL9A1P20849 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL9A1P20849 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL9A1P20849 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL9A1P20849 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.87□□□□□ -1.63
COL9A1P20849 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL9A1P20849 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL9A1P20849 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.87□□□□□ -1.63
COL9A1P20849 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.87□□□□□ -1.63
COL9A1P20849 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC4.87□□□□□ -1.63
COL9A1P20849 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
COL9A1P20849 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL9A1P20849 AL136964.1-201ENST00000622038 2990 ntBASIC4.86□□□□□ -1.63
COL9A1P20849 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL9A1P20849 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.86□□□□□ -1.63
COL9A1P20849 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.86□□□□□ -1.63
COL9A1P20849 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
COL9A1P20849 AC125257.1-201ENST00000560400 2930 ntBASIC4.86□□□□□ -1.63
COL9A1P20849 RNU6-748P-201ENST00000384648 107 ntBASIC4.86□□□□□ -1.63
COL9A1P20849 HSPE1P12-201ENST00000412576 301 ntBASIC4.86□□□□□ -1.63
COL9A1P20849 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.86□□□□□ -1.63
COL9A1P20849 AC011998.1-201ENST00000433403 117 ntBASIC4.86□□□□□ -1.63
COL9A1P20849 RPL23AP62-201ENST00000463396 453 ntBASIC4.86□□□□□ -1.63
COL9A1P20849 MIR5699-201ENST00000578903 90 ntBASIC4.86□□□□□ -1.63
COL9A1P20849 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.86□□□□□ -1.63
COL9A1P20849 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.86□□□□□ -1.63
COL9A1P20849 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL9A1P20849 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.86□□□□□ -1.63
COL9A1P20849 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL9A1P20849 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms