Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 RNU6-397P-201ENST00000516226 104 ntBASIC3.41□□□□□ -1.86
HLA-DOAP06340 Y_RNA.680-201ENST00000516441 93 ntBASIC3.41□□□□□ -1.86
HLA-DOAP06340 RNU6-388P-201ENST00000517012 105 ntBASIC3.41□□□□□ -1.86
HLA-DOAP06340 RNU6-389P-201ENST00000517048 105 ntBASIC3.41□□□□□ -1.86
HLA-DOAP06340 RNU6-794P-201ENST00000517261 64 ntBASIC3.41□□□□□ -1.86
HLA-DOAP06340 AC022616.4-201ENST00000522985 181 ntBASIC3.41□□□□□ -1.86
HLA-DOAP06340 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HLA-DOAP06340 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.41□□□□□ -1.86
HLA-DOAP06340 MIR5047-201ENST00000579212 100 ntBASIC3.41□□□□□ -1.86
HLA-DOAP06340 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.41□□□□□ -1.86
HLA-DOAP06340 AL355297.3-201ENST00000604082 446 ntBASIC3.41□□□□□ -1.86
HLA-DOAP06340 RAC1P9-201ENST00000604990 392 ntBASIC3.41□□□□□ -1.86
HLA-DOAP06340 AL110115.1-201ENST00000614396 364 ntBASIC3.41□□□□□ -1.86
HLA-DOAP06340 U6.99-201ENST00000637524 83 ntBASIC3.41□□□□□ -1.86
HLA-DOAP06340 MIR7153-201ENST00000637758 57 ntBASIC3.41□□□□□ -1.86
HLA-DOAP06340 SRP72P2-201ENST00000344851 1979 ntBASIC3.41□□□□□ -1.86
HLA-DOAP06340 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HLA-DOAP06340 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HLA-DOAP06340 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HLA-DOAP06340 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.41□□□□□ -1.86
HLA-DOAP06340 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.4□□□□□ -1.86
HLA-DOAP06340 Y_RNA.64-201ENST00000362845 102 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 Y_RNA.214-201ENST00000364201 112 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 SNORA46-201ENST00000384762 135 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 MT-TW-201ENST00000387382 68 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 MT-TG-201ENST00000387429 68 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
HLA-DOAP06340 AL591034.2-201ENST00000402839 359 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 RNA5SP494-201ENST00000410653 129 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 Y_RNA.618-201ENST00000410949 107 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 USP9YP16-201ENST00000430287 407 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 AL627311.1-201ENST00000431514 115 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 USP9YP23-201ENST00000455085 407 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 SNRPGP5-201ENST00000456003 220 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 AK3P2-201ENST00000507976 429 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 RN7SKP132-201ENST00000516001 208 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 CYCSP39-201ENST00000565821 309 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 AC004584.2-201ENST00000570407 410 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 MIR4319-201ENST00000577285 85 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 MIR4672-201ENST00000583126 81 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.4□□□□□ -1.87
HLA-DOAP06340 AC078899.3-201ENST00000599065 212 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 MTND4LP5-201ENST00000605152 292 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 AC006023.2-201ENST00000609916 167 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 AC007792.1-201ENST00000623023 402 ntBASIC3.4□□□□□ -1.87
HLA-DOAP06340 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HLA-DOAP06340 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HLA-DOAP06340 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
HLA-DOAP06340 MTCO3P29-201ENST00000432119 779 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.39□□□□□ -1.87
HLA-DOAP06340 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 OSTCP8-201ENST00000445117 448 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 NDUFB1P2-201ENST00000449477 176 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.39□□□□□ -1.87
HLA-DOAP06340 HMGN2P16-201ENST00000456802 261 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 AC104564.1-201ENST00000493028 407 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 RPL30P5-201ENST00000494923 336 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.39□□□□□ -1.87
HLA-DOAP06340 NDUFB4P9-201ENST00000511646 388 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 RPL23AP94-201ENST00000512518 302 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 RNU6-928P-201ENST00000516876 104 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 AP005902.1-201ENST00000521358 186 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.39□□□□□ -1.87
HLA-DOAP06340 AMZ2P1-203ENST00000565833 850 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 AC090517.1-201ENST00000569307 266 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 MIR5696-201ENST00000578474 85 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 MIR5701-3-201ENST00000578890 82 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 MIR5701-1-201ENST00000585138 82 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 Z98751.3-201ENST00000604447 521 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 FTX_3.1-201ENST00000610451 147 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 MIR5701-2-201ENST00000615634 82 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 MIR8062-201ENST00000621515 85 ntBASIC3.39□□□□□ -1.87
HLA-DOAP06340 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
HLA-DOAP06340 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HLA-DOAP06340 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HLA-DOAP06340 MTND5P9-201ENST00000503854 1755 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.38□□□□□ -1.87
HLA-DOAP06340 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
HLA-DOAP06340 Y_RNA.380-201ENST00000365663 111 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 Y_RNA.476-201ENST00000384347 108 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 Y_RNA.483-201ENST00000384380 101 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HLA-DOAP06340 RN7SKP58-201ENST00000411010 305 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 RNA5SP184-201ENST00000411071 108 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 AL078601.1-201ENST00000444542 271 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 UQCRHP3-201ENST00000451503 251 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 AC079354.2-201ENST00000453523 154 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.38□□□□□ -1.87
HLA-DOAP06340 RPS29P27-201ENST00000463711 170 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 AC107222.1-201ENST00000510899 637 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 SNORA40.14-201ENST00000516543 86 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 RNU6-612P-201ENST00000516909 102 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.38□□□□□ -1.87
HLA-DOAP06340 SYF2P1-201ENST00000550658 413 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 AC125232.2-201ENST00000592457 143 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 AC062037.2-201ENST00000610137 73 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 AC027309.3-201ENST00000623419 351 ntBASIC3.38□□□□□ -1.87
HLA-DOAP06340 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.38□□□□□ -1.87
HLA-DOAP06340 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms