Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.39□□□□□ -1.87
NUP88Q99567 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.39□□□□□ -1.87
NUP88Q99567 AC008264.2-201ENST00000610193 3731 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 AL079305.1-201ENST00000623159 3008 ntBASIC3.38□□□□□ -1.87
NUP88Q99567 AC099654.7-201ENST00000635788 2127 ntBASIC3.38□□□□□ -1.87
NUP88Q99567 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.38□□□□□ -1.87
NUP88Q99567 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.38□□□□□ -1.87
NUP88Q99567 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
NUP88Q99567 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
NUP88Q99567 Y_RNA.2-201ENST00000362330 96 ntBASIC3.38□□□□□ -1.87
NUP88Q99567 RNU6-692P-201ENST00000384496 107 ntBASIC3.38□□□□□ -1.87
NUP88Q99567 RNU6-1050P-201ENST00000410388 107 ntBASIC3.38□□□□□ -1.87
NUP88Q99567 RNA5SP274-201ENST00000410484 108 ntBASIC3.38□□□□□ -1.87
NUP88Q99567 RN7SKP58-201ENST00000411010 305 ntBASIC3.38□□□□□ -1.87
NUP88Q99567 USP9YP30-201ENST00000430729 455 ntBASIC3.38□□□□□ -1.87
NUP88Q99567 AC105272.1-201ENST00000438604 198 ntBASIC3.38□□□□□ -1.87
NUP88Q99567 RPL31P41-201ENST00000477967 372 ntBASIC3.38□□□□□ -1.87
NUP88Q99567 SNORA25.11-201ENST00000515935 105 ntBASIC3.38□□□□□ -1.87
NUP88Q99567 AC109446.1-201ENST00000566172 220 ntBASIC3.38□□□□□ -1.87
NUP88Q99567 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.38□□□□□ -1.87
NUP88Q99567 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.38□□□□□ -1.87
NUP88Q99567 MIR4273-201ENST00000582824 84 ntBASIC3.38□□□□□ -1.87
NUP88Q99567 MIR5690-201ENST00000583739 73 ntBASIC3.38□□□□□ -1.87
NUP88Q99567 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.38□□□□□ -1.87
NUP88Q99567 AC009229.3-201ENST00000608056 282 ntBASIC3.38□□□□□ -1.87
NUP88Q99567 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
NUP88Q99567 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
NUP88Q99567 AP003122.5-201ENST00000527668 3766 ntBASIC3.38□□□□□ -1.87
NUP88Q99567 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
NUP88Q99567 RNU6-227P-201ENST00000362865 103 ntBASIC3.37□□□□□ -1.87
NUP88Q99567 RNU6-1059P-201ENST00000363752 98 ntBASIC3.37□□□□□ -1.87
NUP88Q99567 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
NUP88Q99567 MTCYBP4-201ENST00000401524 249 ntBASIC3.37□□□□□ -1.87
NUP88Q99567 RNU6-1140P-201ENST00000410517 106 ntBASIC3.37□□□□□ -1.87
NUP88Q99567 Z98742.2-201ENST00000431564 187 ntBASIC3.37□□□□□ -1.87
NUP88Q99567 AC243964.1-201ENST00000441814 261 ntBASIC3.37□□□□□ -1.87
NUP88Q99567 AC108938.1-201ENST00000451204 136 ntBASIC3.37□□□□□ -1.87
NUP88Q99567 RPL30P15-201ENST00000457129 321 ntBASIC3.37□□□□□ -1.87
NUP88Q99567 RPL36AP48-201ENST00000485521 314 ntBASIC3.37□□□□□ -1.87
NUP88Q99567 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC3.37□□□□□ -1.87
NUP88Q99567 RNU5B-3P-201ENST00000516601 115 ntBASIC3.37□□□□□ -1.87
NUP88Q99567 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
NUP88Q99567 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.37□□□□□ -1.87
NUP88Q99567 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC3.37□□□□□ -1.87
NUP88Q99567 RPS15AP11-201ENST00000594193 385 ntBASIC3.37□□□□□ -1.87
NUP88Q99567 VN1R107P-201ENST00000601784 209 ntBASIC3.37□□□□□ -1.87
NUP88Q99567 AC018462.2-201ENST00000605375 395 ntBASIC3.37□□□□□ -1.87
NUP88Q99567 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.37□□□□□ -1.87
NUP88Q99567 AC084781.2-201ENST00000615568 161 ntBASIC3.37□□□□□ -1.87
NUP88Q99567 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
NUP88Q99567 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
NUP88Q99567 AC009541.1-201ENST00000438279 2662 ntBASIC3.37□□□□□ -1.87
NUP88Q99567 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
NUP88Q99567 RNU6-212P-201ENST00000362642 104 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 RNU4-79P-201ENST00000362764 141 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 SNORA51.4-201ENST00000364993 124 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 SNORD21-201ENST00000383953 95 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 Y_RNA.594-201ENST00000410373 140 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.36□□□□□ -1.87
NUP88Q99567 AL133396.1-201ENST00000432048 687 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 RPL23AP50-201ENST00000434149 455 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.36□□□□□ -1.87
NUP88Q99567 RPL39P29-201ENST00000447779 157 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 AC112771.1-201ENST00000463581 102 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.36□□□□□ -1.87
NUP88Q99567 PTP4A1P4-201ENST00000512479 322 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 SCARNA17.1-201ENST00000516211 143 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 SCARNA17.2-201ENST00000516334 143 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 RNU6-1213P-201ENST00000517075 94 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.36□□□□□ -1.87
NUP88Q99567 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.36□□□□□ -1.87
NUP88Q99567 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.36□□□□□ -1.87
NUP88Q99567 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.36□□□□□ -1.87
NUP88Q99567 MIR4319-201ENST00000577285 85 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 AC090897.2-201ENST00000581715 130 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 MIR4765-201ENST00000585007 77 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 AP001836.1-201ENST00000604675 523 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 MIR8076-201ENST00000611401 83 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 uc_338.14-201ENST00000613162 166 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 SCARNA17.4-201ENST00000614296 143 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 AC126177.8-201ENST00000618339 1015 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 AL669831.3-213ENST00000636676 183 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 KPNA2P1-201ENST00000458289 1591 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 MAPK10-362ENST00000641864 4484 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
NUP88Q99567 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.36□□□□□ -1.87
NUP88Q99567 AC108206.1-201ENST00000570186 4159 ntBASIC3.36□□□□□ -1.87
NUP88Q99567 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.35□□□□□ -1.87
NUP88Q99567 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
NUP88Q99567 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
NUP88Q99567 SNORD114-19-201ENST00000363072 75 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 Y_RNA.123-201ENST00000363338 102 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 U3.13-201ENST00000364804 214 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 SNORA9.2-201ENST00000365361 133 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 RNU6-487P-201ENST00000365430 104 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 RNU6-1083P-201ENST00000384022 107 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 SNORA75.4-201ENST00000391278 119 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 RNA5SP390-201ENST00000410191 113 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms