Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 RNU6-389P-201ENST00000517048 105 ntBASIC4.24□□□□□ -1.73
USP48Q86UV5 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.24□□□□□ -1.73
USP48Q86UV5 AL590705.4-201ENST00000532209 134 ntBASIC4.24□□□□□ -1.73
USP48Q86UV5 AC006199.1-201ENST00000548728 219 ntBASIC4.24□□□□□ -1.73
USP48Q86UV5 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC4.24□□□□□ -1.73
USP48Q86UV5 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
USP48Q86UV5 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.24□□□□□ -1.73
USP48Q86UV5 AL355297.3-201ENST00000604082 446 ntBASIC4.24□□□□□ -1.73
USP48Q86UV5 AC110741.2-201ENST00000605278 268 ntBASIC4.24□□□□□ -1.73
USP48Q86UV5 AC062037.2-201ENST00000610137 73 ntBASIC4.24□□□□□ -1.73
USP48Q86UV5 RMST_8.1-201ENST00000610287 165 ntBASIC4.24□□□□□ -1.73
USP48Q86UV5 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC4.24□□□□□ -1.73
USP48Q86UV5 MIR1244-1-201ENST00000612829 85 ntBASIC4.24□□□□□ -1.73
USP48Q86UV5 MIR1244-3-201ENST00000635744 85 ntBASIC4.24□□□□□ -1.73
USP48Q86UV5 MIR1244-2-201ENST00000636449 85 ntBASIC4.24□□□□□ -1.73
USP48Q86UV5 MIR1244-4-202ENST00000636813 85 ntBASIC4.24□□□□□ -1.73
USP48Q86UV5 ZNF72P-201ENST00000425869 1908 ntBASIC4.24□□□□□ -1.73
USP48Q86UV5 AC004944.1-201ENST00000517807 3059 ntBASIC4.24□□□□□ -1.73
USP48Q86UV5 AC009541.1-201ENST00000438279 2662 ntBASIC4.24□□□□□ -1.73
USP48Q86UV5 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.23□□□□□ -1.73
USP48Q86UV5 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
USP48Q86UV5 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
USP48Q86UV5 Y_RNA.380-201ENST00000365663 111 ntBASIC4.23□□□□□ -1.73
USP48Q86UV5 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
USP48Q86UV5 RNA5SP38-201ENST00000410750 119 ntBASIC4.23□□□□□ -1.73
USP48Q86UV5 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.23□□□□□ -1.73
USP48Q86UV5 AC074117.2-201ENST00000417130 397 ntBASIC4.23□□□□□ -1.73
USP48Q86UV5 AC006989.1-201ENST00000427212 131 ntBASIC4.23□□□□□ -1.73
USP48Q86UV5 AC243964.1-201ENST00000441814 261 ntBASIC4.23□□□□□ -1.73
USP48Q86UV5 MED28P2-201ENST00000475771 317 ntBASIC4.23□□□□□ -1.73
USP48Q86UV5 AC107222.1-201ENST00000510899 637 ntBASIC4.23□□□□□ -1.73
USP48Q86UV5 Y_RNA.680-201ENST00000516441 93 ntBASIC4.23□□□□□ -1.73
USP48Q86UV5 IGKV2-26-201ENST00000518305 343 ntBASIC4.23□□□□□ -1.73
USP48Q86UV5 AC131281.1-201ENST00000522984 164 ntBASIC4.23□□□□□ -1.73
USP48Q86UV5 AC022616.4-201ENST00000522985 181 ntBASIC4.23□□□□□ -1.73
USP48Q86UV5 MIR5188-201ENST00000583467 113 ntBASIC4.23□□□□□ -1.73
USP48Q86UV5 AC016727.2-201ENST00000603988 621 ntBASIC4.23□□□□□ -1.73
USP48Q86UV5 AC019159.1-201ENST00000605094 187 ntBASIC4.23□□□□□ -1.73
USP48Q86UV5 AC006111.3-201ENST00000622137 383 ntBASIC4.23□□□□□ -1.73
USP48Q86UV5 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC4.23□□□□□ -1.73
USP48Q86UV5 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
USP48Q86UV5 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.22□□□□□ -1.73
USP48Q86UV5 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC4.22□□□□□ -1.73
USP48Q86UV5 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.22□□□□□ -1.73
USP48Q86UV5 MTND5P27-201ENST00000428871 1720 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 SNORD56.1-201ENST00000362913 68 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 SNORA80A-201ENST00000363922 136 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 Y_RNA.222-201ENST00000364264 102 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 RNU6-198P-201ENST00000384258 104 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 MTHFD2P2-201ENST00000407725 247 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 MTCYBP2-201ENST00000407745 171 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 MIR1252-201ENST00000408861 65 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 RNU6-847P-201ENST00000411115 108 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC4.22□□□□□ -1.73
USP48Q86UV5 AL714022.1-201ENST00000439897 151 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 DYNLT3P2-201ENST00000442517 295 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 AC012308.1-201ENST00000451232 178 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC4.22□□□□□ -1.73
USP48Q86UV5 RN7SL429P-201ENST00000479090 223 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 RN7SL489P-201ENST00000486185 223 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 RN7SL327P-201ENST00000488659 223 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 RNU6-408P-201ENST00000515910 100 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 SNORA40.14-201ENST00000516543 86 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 RNU6-1231P-201ENST00000517185 103 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 AP006245.1-201ENST00000522549 120 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC4.22□□□□□ -1.73
USP48Q86UV5 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.22□□□□□ -1.73
USP48Q86UV5 AC009163.5-201ENST00000575421 637 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 AC005357.1-201ENST00000588399 301 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.22□□□□□ -1.73
USP48Q86UV5 RN7SL853P-201ENST00000617250 223 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 MIR8062-201ENST00000621515 85 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 MIR3529-201ENST00000637713 78 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP48Q86UV5 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.22□□□□□ -1.73
USP48Q86UV5 AC093908.1-201ENST00000623125 8092 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP48Q86UV5 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.22□□□□□ -1.73
USP48Q86UV5 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
USP48Q86UV5 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.21□□□□□ -1.73
USP48Q86UV5 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP48Q86UV5 RNY3P11-201ENST00000364153 102 ntBASIC4.21□□□□□ -1.74
USP48Q86UV5 Y_RNA.210-201ENST00000364161 110 ntBASIC4.21□□□□□ -1.74
USP48Q86UV5 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
USP48Q86UV5 RNA5SP494-201ENST00000410653 129 ntBASIC4.21□□□□□ -1.74
USP48Q86UV5 AL513124.1-201ENST00000450410 614 ntBASIC4.21□□□□□ -1.74
USP48Q86UV5 RPL23AP62-201ENST00000463396 453 ntBASIC4.21□□□□□ -1.74
USP48Q86UV5 AP002884.2-201ENST00000471647 395 ntBASIC4.21□□□□□ -1.74
USP48Q86UV5 AC104564.1-201ENST00000493028 407 ntBASIC4.21□□□□□ -1.74
USP48Q86UV5 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.21□□□□□ -1.74
USP48Q86UV5 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC4.21□□□□□ -1.74
USP48Q86UV5 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC4.21□□□□□ -1.74
USP48Q86UV5 AL109918.3-201ENST00000603072 338 ntBASIC4.21□□□□□ -1.74
USP48Q86UV5 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC4.21□□□□□ -1.74
USP48Q86UV5 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.21□□□□□ -1.74
USP48Q86UV5 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
USP48Q86UV5 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
USP48Q86UV5 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
USP48Q86UV5 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
USP48Q86UV5 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms