Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC144BQ3MJ40 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC144BQ3MJ40 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
CCDC144BQ3MJ40 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
CCDC144BQ3MJ40 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC144BQ3MJ40 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC144BQ3MJ40 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 Y_RNA.404-201ENST00000383978 102 ntBASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 SNORA75.6-201ENST00000391318 127 ntBASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 Y_RNA.646-201ENST00000410980 101 ntBASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 MICF-203ENST00000432679 129 ntBASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 AC244670.1-201ENST00000436879 112 ntBASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 S100A11P2-201ENST00000467589 312 ntBASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 AC022447.4-201ENST00000504053 364 ntBASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 RNU6-264P-201ENST00000517134 104 ntBASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 AC068657.1-201ENST00000520807 306 ntBASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 AL162274.2-201ENST00000614406 332 ntBASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 AL159153.1-201ENST00000619688 317 ntBASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 MIR7157-201ENST00000635801 60 ntBASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 Z75746.1-201ENST00000440243 2080 ntBASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC144BQ3MJ40 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 MTND5P19-201ENST00000424872 1794 ntBASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 RNU6-212P-201ENST00000362642 104 ntBASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 RNU6-1285P-201ENST00000363480 105 ntBASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 RNU1-57P-201ENST00000384491 166 ntBASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 AL356968.1-201ENST00000416622 474 ntBASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 AF228730.4-201ENST00000421457 183 ntBASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 RPL23AP58-201ENST00000440453 469 ntBASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 AL513124.1-201ENST00000450410 614 ntBASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 SNRPGP7-201ENST00000469016 106 ntBASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 AC093303.1-201ENST00000514549 295 ntBASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 MIR5696-201ENST00000578474 85 ntBASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 AL627309.6-201ENST00000606857 840 ntBASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 AC009318.2-201ENST00000610917 651 ntBASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 MIR7515-201ENST00000637837 67 ntBASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 ZNF299P-201ENST00000406845 1804 ntBASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC144BQ3MJ40 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 Y_RNA.473-201ENST00000384333 102 ntBASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 RNU4-47P-201ENST00000410876 114 ntBASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 RNU6-1304P-201ENST00000411374 106 ntBASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 AC011816.1-201ENST00000441346 546 ntBASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 RNA5SP341-201ENST00000516261 117 ntBASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 RNU6-1213P-201ENST00000517075 94 ntBASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 AC107934.2-201ENST00000518653 310 ntBASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 EIF4BP1-201ENST00000554881 351 ntBASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 AC021231.3-201ENST00000558497 370 ntBASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 AC103810.1-201ENST00000579873 453 ntBASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 MIR3136-201ENST00000583498 78 ntBASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 MIR4719-201ENST00000585233 84 ntBASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC144BQ3MJ40 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 SNORD50.1-201ENST00000362987 71 ntBASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 RNU6-529P-201ENST00000363383 104 ntBASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 RNU4-56P-201ENST00000364700 142 ntBASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 BX276092.3-201ENST00000424182 230 ntBASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 TRIAP1P1-201ENST00000427062 225 ntBASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 GPM6BP3-201ENST00000442797 145 ntBASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 MTCO3P10-201ENST00000455912 772 ntBASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 AC005741.1-201ENST00000511094 432 ntBASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 AC027176.1-201ENST00000560204 514 ntBASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 AC080078.3-201ENST00000605407 463 ntBASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 AC233981.2-201ENST00000611524 1614 ntBASIC3.77□□□□□ -1.81
CCDC144BQ3MJ40 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC144BQ3MJ40 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC144BQ3MJ40 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms