Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC4.05□□□□□ -1.76
LIG3P49916 MAPK10-372ENST00000641954 3413 ntBASIC4.05□□□□□ -1.76
LIG3P49916 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
LIG3P49916 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
LIG3P49916 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
LIG3P49916 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LIG3P49916 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LIG3P49916 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.04□□□□□ -1.76
LIG3P49916 RNU4-90P-201ENST00000362773 141 ntBASIC4.04□□□□□ -1.76
LIG3P49916 Y_RNA.117-201ENST00000363294 101 ntBASIC4.04□□□□□ -1.76
LIG3P49916 RNU6-290P-201ENST00000365212 101 ntBASIC4.04□□□□□ -1.76
LIG3P49916 SNORA36A-201ENST00000384221 132 ntBASIC4.04□□□□□ -1.76
LIG3P49916 Y_RNA.462-201ENST00000384268 102 ntBASIC4.04□□□□□ -1.76
LIG3P49916 AL358075.3-201ENST00000426289 226 ntBASIC4.04□□□□□ -1.76
LIG3P49916 MTND5P15-201ENST00000434246 349 ntBASIC4.04□□□□□ -1.76
LIG3P49916 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.04□□□□□ -1.76
LIG3P49916 CEACAMP4-201ENST00000457676 421 ntBASIC4.04□□□□□ -1.76
LIG3P49916 RPL30P12-201ENST00000474666 353 ntBASIC4.04□□□□□ -1.76
LIG3P49916 AKIRIN2P1-201ENST00000505898 352 ntBASIC4.04□□□□□ -1.76
LIG3P49916 RNU5B-3P-201ENST00000516601 115 ntBASIC4.04□□□□□ -1.76
LIG3P49916 RNU6-58P-201ENST00000517143 103 ntBASIC4.04□□□□□ -1.76
LIG3P49916 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC4.04□□□□□ -1.76
LIG3P49916 MIR4286-201ENST00000580651 93 ntBASIC4.04□□□□□ -1.76
LIG3P49916 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.04□□□□□ -1.76
LIG3P49916 BRDTP1-201ENST00000605735 677 ntBASIC4.04□□□□□ -1.76
LIG3P49916 RMST_8.1-201ENST00000610287 165 ntBASIC4.04□□□□□ -1.76
LIG3P49916 MIR6500-201ENST00000622700 86 ntBASIC4.04□□□□□ -1.76
LIG3P49916 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.04□□□□□ -1.76
LIG3P49916 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
LIG3P49916 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
LIG3P49916 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
LIG3P49916 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LIG3P49916 AC002546.1-201ENST00000588041 2504 ntBASIC4.03□□□□□ -1.76
LIG3P49916 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.03□□□□□ -1.76
LIG3P49916 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.03□□□□□ -1.76
LIG3P49916 RNU6-1266P-201ENST00000362794 105 ntBASIC4.03□□□□□ -1.76
LIG3P49916 SNORD115-8-201ENST00000363856 82 ntBASIC4.03□□□□□ -1.76
LIG3P49916 SNORD115-38-201ENST00000365037 82 ntBASIC4.03□□□□□ -1.76
LIG3P49916 RNU6-281P-201ENST00000384212 103 ntBASIC4.03□□□□□ -1.76
LIG3P49916 U3.19-201ENST00000390893 196 ntBASIC4.03□□□□□ -1.76
LIG3P49916 SNORA26.3-201ENST00000391119 136 ntBASIC4.03□□□□□ -1.76
LIG3P49916 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC4.03□□□□□ -1.76
LIG3P49916 RPS15AP5-201ENST00000436276 388 ntBASIC4.03□□□□□ -1.76
LIG3P49916 TBCAP1-201ENST00000436520 327 ntBASIC4.03□□□□□ -1.76
LIG3P49916 AC005002.2-201ENST00000438228 269 ntBASIC4.03□□□□□ -1.76
LIG3P49916 RPS29P31-201ENST00000446147 164 ntBASIC4.03□□□□□ -1.76
LIG3P49916 AL136097.1-201ENST00000456945 913 ntBASIC4.03□□□□□ -1.76
LIG3P49916 AC107626.1-201ENST00000471084 183 ntBASIC4.03□□□□□ -1.76
LIG3P49916 Y_RNA.700-201ENST00000516806 100 ntBASIC4.03□□□□□ -1.76
LIG3P49916 SCARNA24.2-201ENST00000516968 130 ntBASIC4.03□□□□□ -1.76
LIG3P49916 AC115990.1-201ENST00000526957 301 ntBASIC4.03□□□□□ -1.76
LIG3P49916 MDM2-232ENST00000544561 213 ntTSL 5 BASIC4.03□□□□□ -1.76
LIG3P49916 UBL5P4-201ENST00000562584 236 ntBASIC4.03□□□□□ -1.76
LIG3P49916 AC106785.1-201ENST00000565935 262 ntBASIC4.03□□□□□ -1.76
LIG3P49916 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LIG3P49916 AL606490.9-201ENST00000603331 271 ntBASIC4.03□□□□□ -1.76
LIG3P49916 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC4.03□□□□□ -1.76
LIG3P49916 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LIG3P49916 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
LIG3P49916 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.03□□□□□ -1.76
LIG3P49916 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIG3P49916 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIG3P49916 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LIG3P49916 AC073073.2-201ENST00000609827 2578 ntBASIC4.02□□□□□ -1.77
LIG3P49916 RNU6-102P-201ENST00000384485 104 ntBASIC4.02□□□□□ -1.77
LIG3P49916 PTMAP5-201ENST00000393073 333 ntBASIC4.02□□□□□ -1.77
LIG3P49916 AL033519.2-201ENST00000403958 392 ntBASIC4.02□□□□□ -1.77
LIG3P49916 AL603908.1-201ENST00000406098 201 ntBASIC4.02□□□□□ -1.77
LIG3P49916 RNU6-1001P-201ENST00000411265 100 ntBASIC4.02□□□□□ -1.77
LIG3P49916 PTGES3P4-201ENST00000426243 356 ntBASIC4.02□□□□□ -1.77
LIG3P49916 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
LIG3P49916 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.02□□□□□ -1.77
LIG3P49916 snoU13.6-201ENST00000458785 104 ntBASIC4.02□□□□□ -1.77
LIG3P49916 RNU4-71P-201ENST00000516258 113 ntBASIC4.02□□□□□ -1.77
LIG3P49916 RNU6-567P-201ENST00000516746 107 ntBASIC4.02□□□□□ -1.77
LIG3P49916 SNORD19.2-201ENST00000516978 73 ntBASIC4.02□□□□□ -1.77
LIG3P49916 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.02□□□□□ -1.77
LIG3P49916 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.02□□□□□ -1.77
LIG3P49916 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC4.02□□□□□ -1.77
LIG3P49916 AC098479.1-201ENST00000609225 154 ntBASIC4.02□□□□□ -1.77
LIG3P49916 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.02□□□□□ -1.77
LIG3P49916 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LIG3P49916 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
LIG3P49916 MFSD8-236ENST00000641509 4050 ntBASIC4.02□□□□□ -1.77
LIG3P49916 AL079305.1-201ENST00000623159 3008 ntBASIC4.02□□□□□ -1.77
LIG3P49916 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIG3P49916 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC4.02□□□□□ -1.77
LIG3P49916 AC002543.1-201ENST00000299783 1954 ntBASIC4.02□□□□□ -1.77
LIG3P49916 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
LIG3P49916 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.01□□□□□ -1.77
LIG3P49916 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.01□□□□□ -1.77
LIG3P49916 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
LIG3P49916 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC4.01□□□□□ -1.77
LIG3P49916 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.01□□□□□ -1.77
LIG3P49916 RNU6-1285P-201ENST00000363480 105 ntBASIC4.01□□□□□ -1.77
LIG3P49916 RNU5F-3P-201ENST00000363767 117 ntBASIC4.01□□□□□ -1.77
LIG3P49916 RNU6-280P-201ENST00000364145 104 ntBASIC4.01□□□□□ -1.77
LIG3P49916 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.01□□□□□ -1.77
LIG3P49916 RNU5A-5P-201ENST00000411054 116 ntBASIC4.01□□□□□ -1.77
LIG3P49916 RPS26P42-201ENST00000413485 326 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 152.5 ms