Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 SCARNA18-201ENST00000459004 134 ntBASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 RNU7-180P-201ENST00000459240 63 ntBASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 AC140059.1-201ENST00000489238 361 ntBASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 MTCYBP40-201ENST00000509390 1135 ntBASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 AC074344.1-201ENST00000512823 224 ntBASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 AC104136.1-201ENST00000512969 394 ntBASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 HIF1AP1-201ENST00000553642 175 ntBASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 AC090897.2-201ENST00000581715 130 ntBASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 NDUFA8P1-201ENST00000605525 367 ntBASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 SNORD14A-201ENST00000606526 91 ntBASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 AC068792.1-201ENST00000621354 417 ntBASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 AC097372.5-201ENST00000623665 376 ntBASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
SMIM28A0A1B0GU29 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 RNU6-1159P-201ENST00000362933 107 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 RNU1-17P-201ENST00000363022 152 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 RNU4-24P-201ENST00000364565 139 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 Y_RNA.324-201ENST00000365165 102 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 Y_RNA.409-201ENST00000383990 98 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 Y_RNA.559-201ENST00000384686 107 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 RNU2-29P-201ENST00000410423 189 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 RNU2-16P-201ENST00000410712 136 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 AL606489.2-201ENST00000433886 234 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 AL441985.1-201ENST00000457727 251 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 RPL22P13-201ENST00000493291 347 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 SNORA25.17-201ENST00000517184 124 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 CR383656.8-201ENST00000549046 145 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 AC121758.2-201ENST00000553271 193 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 AC007375.1-201ENST00000554513 578 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 MTCO3P23-201ENST00000561363 289 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 AL138963.2-201ENST00000605137 226 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 AC002044.1-201ENST00000606707 158 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 MIR8081-201ENST00000611533 95 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 DUXAP9-208ENST00000622815 614 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 AC005609.4-201ENST00000625071 447 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 MIR3529-201ENST00000637713 78 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 AC009487.4-201ENST00000624969 3585 ntBASIC1.93□□□□□ -2.1
SMIM28A0A1B0GU29 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 SNORA3A-201ENST00000364113 130 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 RNU6-487P-201ENST00000365430 104 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 RNU6-996P-201ENST00000365438 107 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 RNU6-1032P-201ENST00000384100 107 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 RNU6-517P-201ENST00000384362 110 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 RNU6-393P-201ENST00000384475 107 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 HMGB3P2-201ENST00000411913 584 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 MORF4L1P6-201ENST00000418771 268 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 DLGAP5P1-201ENST00000430307 464 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 IPO7P1-201ENST00000442031 636 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 PRPS1P1-201ENST00000445305 876 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 AC068781.1-201ENST00000488231 618 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 AC105417.1-201ENST00000514691 285 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 SNORA40.12-201ENST00000516329 111 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 RNU6-250P-201ENST00000516958 103 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 IGLV3-17-201ENST00000519099 244 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 AP003392.2-201ENST00000527269 208 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 AC093249.1-201ENST00000567049 203 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 MIR3683-201ENST00000580847 82 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 uc_338.11-201ENST00000619132 160 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 HAUS6P2-201ENST00000433254 2404 ntBASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.92□□□□□ -2.1
SMIM28A0A1B0GU29 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
SMIM28A0A1B0GU29 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SMIM28A0A1B0GU29 RNU6-37P-201ENST00000362692 107 ntBASIC1.91□□□□□ -2.1
SMIM28A0A1B0GU29 RNU6-1010P-201ENST00000362757 107 ntBASIC1.91□□□□□ -2.1
SMIM28A0A1B0GU29 SNORD56.1-201ENST00000362913 68 ntBASIC1.91□□□□□ -2.1
SMIM28A0A1B0GU29 RNU6-266P-201ENST00000364225 107 ntBASIC1.91□□□□□ -2.1
SMIM28A0A1B0GU29 RNU6-11P-201ENST00000364234 107 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms