Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 Z75746.1-201ENST00000440243 2080 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 RNU4-66P-201ENST00000365199 138 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 RNU5E-7P-201ENST00000365290 117 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 MIR514A2-201ENST00000385131 88 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 MIR514A3-201ENST00000385132 88 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 RNA5SP219-201ENST00000390940 113 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 RNA5SP508-201ENST00000411327 119 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 OR9R1P-201ENST00000412200 877 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 CYCSP48-201ENST00000417124 323 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 SEPT14P3-201ENST00000439401 183 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 AL732372.2-207ENST00000445840 183 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 SEPT14P2-201ENST00000453405 183 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 AC117503.1-201ENST00000472241 394 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 SEPT14P4-201ENST00000513445 186 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 SMURF2P1-201ENST00000514992 481 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 SNORA31.11-201ENST00000516528 139 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 RNA5SP82-201ENST00000516707 92 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 FO082796.1-201ENST00000523795 183 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 CENPUP1-201ENST00000526649 1202 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 AP002770.2-201ENST00000543613 532 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 AL157687.1-201ENST00000554853 619 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 AC091544.4-201ENST00000555268 342 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 AL133241.1-201ENST00000556832 487 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 AC105137.2-201ENST00000569073 466 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 VN1R80P-201ENST00000597126 338 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 APOOP1-201ENST00000604695 592 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 MIR6766-201ENST00000622641 72 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 U4.7-201ENST00000638126 106 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 AC068137.3-201ENST00000639191 341 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 MTND5P6-201ENST00000422338 1798 ntBASIC2.49□□□□□ -2.01
CPSF3Q9UKF6 HAUS6P2-201ENST00000433254 2404 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 Y_RNA.38-201ENST00000362617 102 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 RNU1-51P-201ENST00000365345 176 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 RNU6-487P-201ENST00000365430 104 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 Y_RNA.378-201ENST00000365652 113 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 RNU6-622P-201ENST00000384272 103 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 SNORA3.2-201ENST00000408221 125 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 SNORD56-201ENST00000413522 71 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 AC074117.2-201ENST00000417130 397 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 AC097463.2-201ENST00000421074 142 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 MTND3P16-201ENST00000452205 344 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 AC006026.2-201ENST00000457376 180 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 RPL23AP49-201ENST00000492925 468 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 AC008526.1-201ENST00000509149 338 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 RNA5SP402-201ENST00000517148 110 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 AC136619.2-201ENST00000563361 631 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 AC009127.3-201ENST00000570531 403 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 U4atac.1-201ENST00000618345 95 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 AC064859.1-201ENST00000624741 174 ntBASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.48□□□□□ -2.01
CPSF3Q9UKF6 AC138393.1-203ENST00000327086 343 ntBASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 RNU1-72P-201ENST00000362976 153 ntBASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 Y_RNA.167-201ENST00000363735 109 ntBASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 RNA5SP125-201ENST00000364843 120 ntBASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 POLHP1-201ENST00000411806 470 ntBASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 MTCO1P20-201ENST00000425366 358 ntBASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 AL365400.1-201ENST00000431854 640 ntBASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 MTND1P34-201ENST00000438556 671 ntBASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 AC068790.6-201ENST00000602558 258 ntBASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 AC098679.4-201ENST00000624241 654 ntBASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 FER-210ENST00000628534 558 ntTSL 5 BASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
CPSF3Q9UKF6 SNORD56.1-201ENST00000362913 68 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 RNU6-451P-201ENST00000362921 107 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 RNU6-82P-201ENST00000363970 107 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 RNU6-301P-201ENST00000384277 107 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 MIR548F1-201ENST00000408667 84 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 RNA5SP181-201ENST00000410246 98 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 USP9YP27-201ENST00000418455 438 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 Z98742.3-201ENST00000418637 326 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 IFNA11P-201ENST00000446352 526 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 RPL21P99-201ENST00000480369 423 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 191.2 ms