Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AL138976.2-201ENST00000563989 694 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 SNORD14A-201ENST00000606526 91 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 AC103705.1-201ENST00000619013 241 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 U4.3-201ENST00000621047 82 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
VPS28Q9UK41 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS28Q9UK41 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
VPS28Q9UK41 Y_RNA.41-201ENST00000362646 102 ntBASIC2.58□□□□□ -2
VPS28Q9UK41 MIR561-201ENST00000385216 97 ntBASIC2.58□□□□□ -2
VPS28Q9UK41 RPS29P13-201ENST00000402041 169 ntBASIC2.58□□□□□ -2
VPS28Q9UK41 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.58□□□□□ -2
VPS28Q9UK41 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.58□□□□□ -2
VPS28Q9UK41 ARL5AP1-201ENST00000418991 388 ntBASIC2.58□□□□□ -2
VPS28Q9UK41 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.58□□□□□ -2
VPS28Q9UK41 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC2.58□□□□□ -2
VPS28Q9UK41 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.58□□□□□ -2
VPS28Q9UK41 RPS12P2-201ENST00000439728 269 ntBASIC2.58□□□□□ -2
VPS28Q9UK41 AC243964.1-201ENST00000441814 261 ntBASIC2.58□□□□□ -2
VPS28Q9UK41 USP9YP8-201ENST00000441913 500 ntBASIC2.58□□□□□ -2
VPS28Q9UK41 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.58□□□□□ -2
VPS28Q9UK41 AP000852.1-201ENST00000472460 573 ntBASIC2.58□□□□□ -2
VPS28Q9UK41 AC068781.1-201ENST00000488231 618 ntBASIC2.58□□□□□ -2
VPS28Q9UK41 RPL30P1-201ENST00000488676 339 ntBASIC2.58□□□□□ -2
VPS28Q9UK41 AK3P2-201ENST00000507976 429 ntBASIC2.58□□□□□ -2
VPS28Q9UK41 AC115990.1-201ENST00000526957 301 ntBASIC2.58□□□□□ -2
VPS28Q9UK41 AC025165.5-201ENST00000602802 578 ntBASIC2.58□□□□□ -2
VPS28Q9UK41 AC092747.3-201ENST00000603769 301 ntBASIC2.58□□□□□ -2
VPS28Q9UK41 AC107304.1-201ENST00000604229 296 ntBASIC2.58□□□□□ -2
VPS28Q9UK41 AC092954.2-201ENST00000609103 430 ntBASIC2.58□□□□□ -2
VPS28Q9UK41 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.58□□□□□ -2
VPS28Q9UK41 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.58□□□□□ -2
VPS28Q9UK41 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS28Q9UK41 Z82209.1-201ENST00000422141 2135 ntBASIC2.57□□□□□ -2
VPS28Q9UK41 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.57□□□□□ -2
VPS28Q9UK41 Z82195.2-201ENST00000612348 18351 ntBASIC2.57□□□□□ -2
VPS28Q9UK41 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
VPS28Q9UK41 RNU6-827P-201ENST00000365553 106 ntBASIC2.57□□□□□ -2
VPS28Q9UK41 RNU4-20P-201ENST00000365601 151 ntBASIC2.57□□□□□ -2
VPS28Q9UK41 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
VPS28Q9UK41 RNU1-148P-201ENST00000384472 162 ntBASIC2.57□□□□□ -2
VPS28Q9UK41 MIR524-201ENST00000385242 87 ntBASIC2.57□□□□□ -2
VPS28Q9UK41 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.57□□□□□ -2
VPS28Q9UK41 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.57□□□□□ -2
VPS28Q9UK41 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.57□□□□□ -2
VPS28Q9UK41 AL513328.1-201ENST00000446460 224 ntBASIC2.57□□□□□ -2
VPS28Q9UK41 Y_RNA.654-201ENST00000497848 106 ntBASIC2.57□□□□□ -2
VPS28Q9UK41 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.57□□□□□ -2
VPS28Q9UK41 RNU6-1281P-201ENST00000516223 105 ntBASIC2.57□□□□□ -2
VPS28Q9UK41 RNU6-1038P-201ENST00000516516 104 ntBASIC2.57□□□□□ -2
VPS28Q9UK41 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.57□□□□□ -2
VPS28Q9UK41 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.57□□□□□ -2
VPS28Q9UK41 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC2.57□□□□□ -2
VPS28Q9UK41 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC2.57□□□□□ -2
VPS28Q9UK41 MIR5092-201ENST00000583139 88 ntBASIC2.57□□□□□ -2
VPS28Q9UK41 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.57□□□□□ -2
VPS28Q9UK41 AL162413.1-201ENST00000603198 110 ntBASIC2.57□□□□□ -2
VPS28Q9UK41 AC064807.4-201ENST00000607201 407 ntBASIC2.57□□□□□ -2
VPS28Q9UK41 AC245884.12-201ENST00000615364 59 ntBASIC2.57□□□□□ -2
VPS28Q9UK41 AC243829.7-201ENST00000633081 225 ntBASIC2.57□□□□□ -2
VPS28Q9UK41 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.57□□□□□ -2
VPS28Q9UK41 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
VPS28Q9UK41 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.57□□□□□ -2
VPS28Q9UK41 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
VPS28Q9UK41 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
VPS28Q9UK41 RNU4-82P-201ENST00000362443 140 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 RNU1-91P-201ENST00000364746 163 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 U3.13-201ENST00000364804 214 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 MIR29B2-201ENST00000385055 81 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.56□□□□□ -2
VPS28Q9UK41 RNU6-1106P-201ENST00000390845 107 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 RNU6-780P-201ENST00000391030 104 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 AL591034.2-201ENST00000402839 359 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.56□□□□□ -2
VPS28Q9UK41 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.56□□□□□ -2
VPS28Q9UK41 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.56□□□□□ -2
VPS28Q9UK41 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.56□□□□□ -2
VPS28Q9UK41 MTND3P16-201ENST00000452205 344 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.56□□□□□ -2
VPS28Q9UK41 RPL21P99-201ENST00000480369 423 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.56□□□□□ -2
VPS28Q9UK41 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.56□□□□□ -2
VPS28Q9UK41 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.56□□□□□ -2
VPS28Q9UK41 RNU6-314P-201ENST00000516574 104 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 SNORA31.15-201ENST00000516771 132 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 SNORD60.2-201ENST00000516883 86 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 RNA5SP402-201ENST00000517148 110 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 RN7SKP256-201ENST00000517201 314 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.56□□□□□ -2
VPS28Q9UK41 AC103996.1-201ENST00000555468 102 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.56□□□□□ -2
VPS28Q9UK41 YWHAEP7-203ENST00000622054 312 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 AC241585.2-209ENST00000638217 143 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
VPS28Q9UK41 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.56□□□□□ -2
VPS28Q9UK41 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.56□□□□□ -2
VPS28Q9UK41 ZNF271P-202ENST00000465539 1970 ntBASIC2.56□□□□□ -2
VPS28Q9UK41 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VPS28Q9UK41 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.55□□□□□ -2
VPS28Q9UK41 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.55□□□□□ -2
VPS28Q9UK41 RNU1-23P-201ENST00000363361 144 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms