Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 FTH1P15-201ENST00000406984 280 ntBASIC4.33□□□□□ -1.72
CNTN3Q9P232 RNU6ATAC15P-201ENST00000408279 121 ntBASIC4.33□□□□□ -1.72
CNTN3Q9P232 RNA5SP306-201ENST00000411087 107 ntBASIC4.33□□□□□ -1.72
CNTN3Q9P232 AL606753.1-201ENST00000427435 87 ntBASIC4.33□□□□□ -1.72
CNTN3Q9P232 POLR2KP2-201ENST00000438155 177 ntBASIC4.33□□□□□ -1.72
CNTN3Q9P232 AC091959.1-201ENST00000495857 238 ntBASIC4.33□□□□□ -1.72
CNTN3Q9P232 CKS1BP7-201ENST00000522230 235 ntBASIC4.33□□□□□ -1.72
CNTN3Q9P232 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.33□□□□□ -1.72
CNTN3Q9P232 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC4.33□□□□□ -1.72
CNTN3Q9P232 YPEL5P3-201ENST00000547227 352 ntBASIC4.33□□□□□ -1.72
CNTN3Q9P232 UBL5P4-201ENST00000562584 236 ntBASIC4.33□□□□□ -1.72
CNTN3Q9P232 AC012531.5-201ENST00000611375 151 ntBASIC4.33□□□□□ -1.72
CNTN3Q9P232 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.33□□□□□ -1.72
CNTN3Q9P232 AC073073.2-201ENST00000609827 2578 ntBASIC4.33□□□□□ -1.72
CNTN3Q9P232 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.33□□□□□ -1.72
CNTN3Q9P232 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CNTN3Q9P232 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.33□□□□□ -1.72
CNTN3Q9P232 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
CNTN3Q9P232 AC106871.1-201ENST00000568324 3102 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CNTN3Q9P232 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CNTN3Q9P232 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CNTN3Q9P232 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.32□□□□□ -1.72
CNTN3Q9P232 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
CNTN3Q9P232 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CNTN3Q9P232 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CNTN3Q9P232 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CNTN3Q9P232 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
CNTN3Q9P232 RNU6-858P-201ENST00000362436 107 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 RNU6-1280P-201ENST00000365211 107 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 SNORD113-1-201ENST00000365321 69 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 RNU6-47P-201ENST00000383866 107 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 RNU6-213P-201ENST00000384051 104 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 U3.19-201ENST00000390893 196 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 RNU6-493P-201ENST00000391321 108 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 Y_RNA.595-201ENST00000410403 105 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.32□□□□□ -1.72
CNTN3Q9P232 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.32□□□□□ -1.72
CNTN3Q9P232 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.32□□□□□ -1.72
CNTN3Q9P232 TRAPPC2P7-201ENST00000509650 231 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.32□□□□□ -1.72
CNTN3Q9P232 SNORA40.9-201ENST00000515895 93 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 SNORA31.23-201ENST00000517219 133 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC4.32□□□□□ -1.72
CNTN3Q9P232 AC005176.2-201ENST00000596933 147 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 AC073349.3-201ENST00000617616 186 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.32□□□□□ -1.72
CNTN3Q9P232 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.32□□□□□ -1.72
CNTN3Q9P232 IGHVIII-44-202ENST00000636235 289 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 MIR3529-201ENST00000637713 78 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 AC087190.4-201ENST00000574616 8334 ntBASIC4.32□□□□□ -1.72
CNTN3Q9P232 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.32□□□□□ -1.72
CNTN3Q9P232 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC4.32□□□□□ -1.72
CNTN3Q9P232 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CNTN3Q9P232 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
CNTN3Q9P232 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.32□□□□□ -1.72
CNTN3Q9P232 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.31□□□□□ -1.72
CNTN3Q9P232 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.31□□□□□ -1.72
CNTN3Q9P232 AF127577.6-201ENST00000623352 2191 ntBASIC4.31□□□□□ -1.72
CNTN3Q9P232 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CNTN3Q9P232 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CNTN3Q9P232 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
CNTN3Q9P232 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.31□□□□□ -1.72
CNTN3Q9P232 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CNTN3Q9P232 RNU6-961P-201ENST00000363893 105 ntBASIC4.31□□□□□ -1.72
CNTN3Q9P232 RNA5SP399-201ENST00000364003 117 ntBASIC4.31□□□□□ -1.72
CNTN3Q9P232 Y_RNA.240-201ENST00000364469 95 ntBASIC4.31□□□□□ -1.72
CNTN3Q9P232 Y_RNA.446-201ENST00000384178 104 ntBASIC4.31□□□□□ -1.72
CNTN3Q9P232 SNORA11-201ENST00000408789 128 ntBASIC4.31□□□□□ -1.72
CNTN3Q9P232 RPS26P42-201ENST00000413485 326 ntBASIC4.31□□□□□ -1.72
CNTN3Q9P232 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.31□□□□□ -1.72
CNTN3Q9P232 RPS29P7-201ENST00000439662 171 ntBASIC4.31□□□□□ -1.72
CNTN3Q9P232 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.31□□□□□ -1.72
CNTN3Q9P232 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.31□□□□□ -1.72
CNTN3Q9P232 AC012308.1-201ENST00000451232 178 ntBASIC4.31□□□□□ -1.72
CNTN3Q9P232 HMGN2P7-201ENST00000456186 273 ntBASIC4.31□□□□□ -1.72
CNTN3Q9P232 SNRPGP7-201ENST00000469016 106 ntBASIC4.31□□□□□ -1.72
CNTN3Q9P232 AP001025.1-201ENST00000486139 332 ntBASIC4.31□□□□□ -1.72
CNTN3Q9P232 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.31□□□□□ -1.72
CNTN3Q9P232 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CNTN3Q9P232 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC4.31□□□□□ -1.72
CNTN3Q9P232 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.31□□□□□ -1.72
CNTN3Q9P232 AC009163.5-201ENST00000575421 637 ntBASIC4.31□□□□□ -1.72
CNTN3Q9P232 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC4.31□□□□□ -1.72
CNTN3Q9P232 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.31□□□□□ -1.72
CNTN3Q9P232 AL451007.1-201ENST00000595491 289 ntBASIC4.31□□□□□ -1.72
CNTN3Q9P232 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.31□□□□□ -1.72
CNTN3Q9P232 AL590240.4-201ENST00000616908 390 ntBASIC4.31□□□□□ -1.72
CNTN3Q9P232 AC002076.2-201ENST00000617362 122 ntBASIC4.31□□□□□ -1.72
CNTN3Q9P232 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.31□□□□□ -1.72
CNTN3Q9P232 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CNTN3Q9P232 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
CNTN3Q9P232 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CNTN3Q9P232 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
CNTN3Q9P232 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.3□□□□□ -1.72
CNTN3Q9P232 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.3□□□□□ -1.72
CNTN3Q9P232 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.3□□□□□ -1.72
CNTN3Q9P232 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC4.3□□□□□ -1.72
CNTN3Q9P232 RNA5SP295-201ENST00000362655 121 ntBASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 320.5 ms