Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU6-351P-201ENST00000516097 100 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 RNU6-667P-201ENST00000517186 102 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC0.74□□□□□ -2.29
SCN3AQ9NY46 AC016957.1-201ENST00000534895 309 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC0.74□□□□□ -2.29
SCN3AQ9NY46 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.74□□□□□ -2.29
SCN3AQ9NY46 AL606834.3-201ENST00000602615 496 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 AL356596.1-201ENST00000624230 379 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 ZNF29P-201ENST00000225587 168 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
SCN3AQ9NY46 RNU6-946P-201ENST00000383878 107 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 RNU2-36P-201ENST00000410361 191 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 RNU6-1025P-201ENST00000410629 104 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 RNU6-733P-201ENST00000410759 104 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 HMGB1P30-201ENST00000492455 606 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC0.74□□□□□ -2.29
SCN3AQ9NY46 RNU6-150P-201ENST00000516237 95 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.74□□□□□ -2.29
SCN3AQ9NY46 AP003034.1-201ENST00000534621 422 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC0.74□□□□□ -2.29
SCN3AQ9NY46 AP000763.2-201ENST00000540641 163 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC0.74□□□□□ -2.29
SCN3AQ9NY46 AL138889.2-201ENST00000603883 242 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 AC245297.2-201ENST00000610119 565 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 AC099654.8-201ENST00000637757 681 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
SCN3AQ9NY46 HSBP1P2-201ENST00000299671 229 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 MIR412-201ENST00000362142 91 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 RNU1-124P-201ENST00000363861 145 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 Y_RNA.332-201ENST00000365271 113 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 CBX3P9-201ENST00000402326 552 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 RNU2-32P-201ENST00000411193 191 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC0.73□□□□□ -2.29
SCN3AQ9NY46 UBE2V1P10-201ENST00000414685 269 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 AC016831.2-201ENST00000417179 352 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC0.73□□□□□ -2.29
SCN3AQ9NY46 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.73□□□□□ -2.29
SCN3AQ9NY46 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.73□□□□□ -2.29
SCN3AQ9NY46 RNA5SP404-201ENST00000517118 132 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 AC087894.1-201ENST00000538359 518 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.73□□□□□ -2.29
SCN3AQ9NY46 UBE2Q2P8-201ENST00000560644 102 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 AC022022.2-201ENST00000602989 360 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 AL020996.3-201ENST00000606617 222 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 AL365434.2-201ENST00000607979 234 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 AC130324.3-201ENST00000614165 542 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.73□□□□□ -2.29
SCN3AQ9NY46 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.73□□□□□ -2.29
SCN3AQ9NY46 ANKRD36BP1-202ENST00000604892 1417 ntBASIC0.73□□□□□ -2.29
SCN3AQ9NY46 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.73□□□□□ -2.29
SCN3AQ9NY46 RNU6-487P-201ENST00000365430 104 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 RNY1P4-201ENST00000384595 115 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 Y_RNA.534-201ENST00000384599 112 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 CST2P1-201ENST00000425770 87 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.72□□□□□ -2.29
SCN3AQ9NY46 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.72□□□□□ -2.29
SCN3AQ9NY46 RPL31P3-201ENST00000458430 332 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 RPL30P1-201ENST00000488676 339 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
SCN3AQ9NY46 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.72□□□□□ -2.29
SCN3AQ9NY46 AC090115.3-201ENST00000553218 849 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 MIR3169-201ENST00000578032 83 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 AP001981.2-201ENST00000603241 418 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC0.72□□□□□ -2.29
SCN3AQ9NY46 AL359547.2-201ENST00000615810 418 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 RNU6-271P-201ENST00000363858 105 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 RNU6-438P-201ENST00000365561 103 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 RNA5SP390-201ENST00000410191 113 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 RN7SKP266-201ENST00000410232 287 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC0.72□□□□□ -2.29
SCN3AQ9NY46 POLR2J4-204ENST00000418424 324 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 USP9YP17-201ENST00000444617 696 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC0.72□□□□□ -2.29
SCN3AQ9NY46 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC0.72□□□□□ -2.29
SCN3AQ9NY46 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.72□□□□□ -2.29
SCN3AQ9NY46 AC109445.1-201ENST00000512356 383 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 SNORD116-28-201ENST00000516123 91 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 RNU6-64P-201ENST00000517119 105 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 AL353778.1-201ENST00000603149 408 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 AC022893.3-201ENST00000607665 437 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 MIR8065-201ENST00000620577 100 ntBASIC0.72□□□□□ -2.29
SCN3AQ9NY46 MIR520E-201ENST00000384867 87 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AL365338.1-201ENST00000422282 858 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AC007327.1-201ENST00000447461 264 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AP000542.1-201ENST00000448473 371 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 RNU6-902P-201ENST00000517212 91 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AC130454.1-201ENST00000622948 401 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AC027335.2-201ENST00000624030 375 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AC010487.4-201ENST00000637027 61 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 MIR3529-201ENST00000637713 78 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 MTND5P42-201ENST00000637720 498 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 SNORA4.3-201ENST00000365564 137 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 RNU6-26P-201ENST00000383985 107 ntBASIC0.71□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms