| USP41 | Q3LFD5 | RNU7-66P-201 | ENST00000459469 | 62 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | MED28P2-201 | ENST00000475771 | 317 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RPL23AP49-201 | ENST00000492925 | 468 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | MTCO2P30-201 | ENST00000503662 | 364 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RNU6-377P-201 | ENST00000515965 | 102 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RNU4-49P-201 | ENST00000516080 | 140 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RNU6-273P-201 | ENST00000516937 | 96 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | HSPE1P20-201 | ENST00000538133 | 289 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC243972.3-201 | ENST00000539655 | 198 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC027176.1-201 | ENST00000560204 | 514 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC009163.5-201 | ENST00000575421 | 637 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | LINC01900-203 | ENST00000585185 | 393 nt | TSL 3 BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AL670379.10-201 | ENST00000604330 | 253 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AL670379.9-201 | ENST00000605428 | 253 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | FAM157A-202 | ENST00000615155 | 405 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC009248.2-201 | ENST00000619826 | 254 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | U4.3-201 | ENST00000621047 | 82 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | CYLC1-202 | ENST00000621735 | 379 nt | APPRIS ALT2 TSL 3 BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | DUXAP9-208 | ENST00000622815 | 614 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | MAP3K2-203 | ENST00000409947 | 10992 nt | APPRIS P1 TSL 1 (best) BASIC | 2.76 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | ATP11C-201 | ENST00000327569 | 6115 nt | APPRIS P3 TSL 1 (best) BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | CENPE-201 | ENST00000265148 | 8612 nt | APPRIS P1 TSL 2 BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | CBX3P1-201 | ENST00000325243 | 554 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | SPAG11A-202 | ENST00000326625 | 445 nt | TSL 5 BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RNU6-527P-201 | ENST00000363425 | 104 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AL133475.1-201 | ENST00000404414 | 305 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RNA5SP492-201 | ENST00000411330 | 114 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC138393.2-201 | ENST00000414742 | 246 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | VN1R36P-201 | ENST00000414936 | 291 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC009963.1-201 | ENST00000417265 | 157 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AL355314.2-201 | ENST00000427182 | 436 nt | TSL 3 BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | UBBP3-201 | ENST00000445497 | 241 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC096733.1-201 | ENST00000503844 | 402 nt | TSL 3 BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | SEM1P1-201 | ENST00000506694 | 209 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC010210.1-203 | ENST00000513905 | 260 nt | TSL 3 BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RNU5F-8P-201 | ENST00000515941 | 111 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | SCARNA17.1-201 | ENST00000516211 | 143 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | SCARNA17.2-201 | ENST00000516334 | 143 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RN7SKP256-201 | ENST00000517201 | 314 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC104576.1-201 | ENST00000524225 | 88 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AP005597.4-201 | ENST00000526762 | 229 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AL121821.1-201 | ENST00000557067 | 530 nt | TSL 3 BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | SCARNA17.4-201 | ENST00000614296 | 143 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | CHD1-201 | ENST00000284049 | 6457 nt | APPRIS P1 TSL 1 (best) BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | LIG4-203 | ENST00000442234 | 3982 nt | APPRIS P1 TSL 1 (best) BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | TTC6-201 | ENST00000267368 | 1681 nt | TSL 5 BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AL161431.1-201 | ENST00000618966 | 4205 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AK9-203 | ENST00000368948 | 2478 nt | TSL 5 BASIC | 2.75 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | OR2J3-203 | ENST00000641960 | 3342 nt | APPRIS P1 BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RNU6-827P-201 | ENST00000365553 | 106 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RNU6-214P-201 | ENST00000384130 | 107 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | HMGN2P35-201 | ENST00000412164 | 270 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | LINC01853-201 | ENST00000417715 | 444 nt | TSL 3 BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RPL21P111-201 | ENST00000418453 | 477 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | TTTY8-202 | ENST00000426035 | 518 nt | TSL 1 (best) BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC004383.1-201 | ENST00000438135 | 289 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC011816.1-201 | ENST00000441346 | 546 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AL359672.1-201 | ENST00000442302 | 409 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | OSTCP8-201 | ENST00000445117 | 448 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | Z96811.1-201 | ENST00000445880 | 108 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | TTTY8B-202 | ENST00000455570 | 518 nt | TSL 1 (best) BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AL354824.2-201 | ENST00000458004 | 446 nt | TSL 3 BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RPL7P43-201 | ENST00000478876 | 753 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | TRBVA-201 | ENST00000498804 | 316 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RN7SKP24-201 | ENST00000515888 | 284 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RNA5SP320-201 | ENST00000516263 | 124 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RNU6-256P-201 | ENST00000516747 | 97 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC109479.2-201 | ENST00000517842 | 174 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | SNORD53-201 | ENST00000579969 | 78 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | MIR548S-201 | ENST00000581352 | 82 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | MIR3942-201 | ENST00000585264 | 109 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AL121917.1-203 | ENST00000605534 | 577 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RPL23AP88-201 | ENST00000605759 | 454 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | WT1-AS_8.1-201 | ENST00000615200 | 275 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC097372.5-201 | ENST00000623665 | 376 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | U4.7-201 | ENST00000638126 | 106 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | TEX9-207 | ENST00000560582 | 2005 nt | TSL 3 BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | FTX-214 | ENST00000638437 | 12267 nt | TSL 5 BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | TMPRSS11A-201 | ENST00000334830 | 3054 nt | APPRIS P3 TSL 2 BASIC | 2.74 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | SNORD56.1-201 | ENST00000362913 | 68 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RNU6-428P-201 | ENST00000362942 | 107 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | SNORD56.5-201 | ENST00000364281 | 72 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RNU6-767P-201 | ENST00000384132 | 107 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RNU6-748P-201 | ENST00000384648 | 107 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | RNU6-510P-201 | ENST00000391239 | 108 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | OPRPN-201 | ENST00000399575 | 1040 nt | APPRIS P1 TSL 1 (best) BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | MAGEA8-AS1-201 | ENST00000427671 | 476 nt | TSL 3 BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | MTND4LP16-201 | ENST00000440828 | 295 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AL360091.2-201 | ENST00000446847 | 650 nt | TSL 5 BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC019155.3-201 | ENST00000454957 | 600 nt | TSL 2 BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | PMCHL2-203 | ENST00000457791 | 237 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AP001324.2-201 | ENST00000461163 | 319 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | APOA2-205 | ENST00000468465 | 421 nt | TSL 2 BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | SNORA20.3-201 | ENST00000516880 | 132 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC090568.2-205 | ENST00000518631 | 576 nt | TSL 4 BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC109329.2-201 | ENST00000519658 | 482 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC099554.1-201 | ENST00000520032 | 572 nt | TSL 3 BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | AC087241.2-201 | ENST00000535801 | 324 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | CASC1-205 | ENST00000545133 | 2146 nt | APPRIS ALT2 TSL 2 BASIC | 2.73 | □□□□□ -1.97 | | |
| USP41 | Q3LFD5 | CR383656.8-201 | ENST00000549046 | 145 nt | BASIC | 2.73 | □□□□□ -1.97 | | |