Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 Y_RNA.602-201ENST00000410535 92 ntBASIC4.33□□□□□ -1.72
LIG1P18858 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC4.33□□□□□ -1.72
LIG1P18858 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.33□□□□□ -1.72
LIG1P18858 AC007389.2-201ENST00000434630 306 ntBASIC4.33□□□□□ -1.72
LIG1P18858 NDUFB1P1-201ENST00000435191 180 ntBASIC4.33□□□□□ -1.72
LIG1P18858 Z82188.1-201ENST00000436709 154 ntBASIC4.33□□□□□ -1.72
LIG1P18858 AC124916.1-201ENST00000444020 547 ntBASIC4.33□□□□□ -1.72
LIG1P18858 TOMM22P6-201ENST00000465035 409 ntBASIC4.33□□□□□ -1.72
LIG1P18858 RPS26P21-201ENST00000475397 348 ntBASIC4.33□□□□□ -1.72
LIG1P18858 SNORA31.8-201ENST00000516327 108 ntBASIC4.33□□□□□ -1.72
LIG1P18858 RNU1-45P-201ENST00000517191 141 ntBASIC4.33□□□□□ -1.72
LIG1P18858 TRAV28-201ENST00000557548 323 ntBASIC4.33□□□□□ -1.72
LIG1P18858 AC010928.2-201ENST00000588017 287 ntBASIC4.33□□□□□ -1.72
LIG1P18858 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.33□□□□□ -1.72
LIG1P18858 AC068831.7-201ENST00000616954 363 ntBASIC4.33□□□□□ -1.72
LIG1P18858 AC099506.2-201ENST00000623074 221 ntBASIC4.33□□□□□ -1.72
LIG1P18858 AC097372.5-201ENST00000623665 376 ntBASIC4.33□□□□□ -1.72
LIG1P18858 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.33□□□□□ -1.72
LIG1P18858 SCARNA4-201ENST00000629045 128 ntBASIC4.33□□□□□ -1.72
LIG1P18858 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LIG1P18858 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
LIG1P18858 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.33□□□□□ -1.72
LIG1P18858 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.33□□□□□ -1.72
LIG1P18858 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
LIG1P18858 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
LIG1P18858 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
LIG1P18858 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
LIG1P18858 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
LIG1P18858 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
LIG1P18858 RNU4-90P-201ENST00000362773 141 ntBASIC4.32□□□□□ -1.72
LIG1P18858 Y_RNA.199-201ENST00000364014 102 ntBASIC4.32□□□□□ -1.72
LIG1P18858 RNU6-283P-201ENST00000364788 107 ntBASIC4.32□□□□□ -1.72
LIG1P18858 MIR30B-201ENST00000384850 88 ntBASIC4.32□□□□□ -1.72
LIG1P18858 HSPE1P25-201ENST00000455484 251 ntBASIC4.32□□□□□ -1.72
LIG1P18858 RPL23AP14-201ENST00000468281 468 ntBASIC4.32□□□□□ -1.72
LIG1P18858 RN7SL323P-201ENST00000494712 295 ntBASIC4.32□□□□□ -1.72
LIG1P18858 SNORA70.16-201ENST00000516390 95 ntBASIC4.32□□□□□ -1.72
LIG1P18858 AC022695.1-201ENST00000522089 237 ntBASIC4.32□□□□□ -1.72
LIG1P18858 HSPE1P5-201ENST00000561489 272 ntBASIC4.32□□□□□ -1.72
LIG1P18858 MIR5685-201ENST00000579080 79 ntBASIC4.32□□□□□ -1.72
LIG1P18858 AC136601.2-201ENST00000604356 474 ntBASIC4.32□□□□□ -1.72
LIG1P18858 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.32□□□□□ -1.72
LIG1P18858 AL110115.1-201ENST00000614396 364 ntBASIC4.32□□□□□ -1.72
LIG1P18858 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.32□□□□□ -1.72
LIG1P18858 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC4.32□□□□□ -1.72
LIG1P18858 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
LIG1P18858 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
LIG1P18858 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
LIG1P18858 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
LIG1P18858 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LIG1P18858 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.31□□□□□ -1.72
LIG1P18858 MIR411-201ENST00000362239 96 ntBASIC4.31□□□□□ -1.72
LIG1P18858 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.31□□□□□ -1.72
LIG1P18858 RNU6-102P-201ENST00000384485 104 ntBASIC4.31□□□□□ -1.72
LIG1P18858 MIR134-201ENST00000385258 73 ntBASIC4.31□□□□□ -1.72
LIG1P18858 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
LIG1P18858 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
LIG1P18858 EI24P2-201ENST00000397776 1076 ntBASIC4.31□□□□□ -1.72
LIG1P18858 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC4.31□□□□□ -1.72
LIG1P18858 AC017079.2-201ENST00000416102 485 ntBASIC4.31□□□□□ -1.72
LIG1P18858 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC4.31□□□□□ -1.72
LIG1P18858 AC009296.1-201ENST00000443146 155 ntBASIC4.31□□□□□ -1.72
LIG1P18858 AC016700.2-201ENST00000446011 156 ntBASIC4.31□□□□□ -1.72
LIG1P18858 RPL23AP75-201ENST00000491601 451 ntBASIC4.31□□□□□ -1.72
LIG1P18858 RN7SKP209-201ENST00000516888 304 ntBASIC4.31□□□□□ -1.72
LIG1P18858 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.31□□□□□ -1.72
LIG1P18858 MIR1254-2-201ENST00000579553 63 ntBASIC4.31□□□□□ -1.72
LIG1P18858 AL354798.1-201ENST00000622505 329 ntBASIC4.31□□□□□ -1.72
LIG1P18858 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
LIG1P18858 AC009541.1-201ENST00000438279 2662 ntBASIC4.3□□□□□ -1.72
LIG1P18858 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
LIG1P18858 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
LIG1P18858 SNORD115-32-201ENST00000364079 82 ntBASIC4.3□□□□□ -1.72
LIG1P18858 RNU6-213P-201ENST00000384051 104 ntBASIC4.3□□□□□ -1.72
LIG1P18858 RNU1-101P-201ENST00000391171 127 ntBASIC4.3□□□□□ -1.72
LIG1P18858 AL033519.2-201ENST00000403958 392 ntBASIC4.3□□□□□ -1.72
LIG1P18858 RN7SKP202-201ENST00000410439 330 ntBASIC4.3□□□□□ -1.72
LIG1P18858 RNA5SP31-201ENST00000411144 127 ntBASIC4.3□□□□□ -1.72
LIG1P18858 CYCSP19-201ENST00000411715 316 ntBASIC4.3□□□□□ -1.72
LIG1P18858 RAB9AP3-201ENST00000412737 573 ntBASIC4.3□□□□□ -1.72
LIG1P18858 SNRPEP9-201ENST00000436794 238 ntBASIC4.3□□□□□ -1.72
LIG1P18858 RPS29P31-201ENST00000446147 164 ntBASIC4.3□□□□□ -1.72
LIG1P18858 RAB9AP1-201ENST00000449393 573 ntBASIC4.3□□□□□ -1.72
LIG1P18858 HMGB3P8-201ENST00000449709 577 ntBASIC4.3□□□□□ -1.72
LIG1P18858 SEPT14P8-201ENST00000508026 178 ntBASIC4.3□□□□□ -1.72
LIG1P18858 SNORA25.14-201ENST00000516481 132 ntBASIC4.3□□□□□ -1.72
LIG1P18858 Y_RNA.703-201ENST00000516846 111 ntBASIC4.3□□□□□ -1.72
LIG1P18858 RNU6-703P-201ENST00000516946 107 ntBASIC4.3□□□□□ -1.72
LIG1P18858 RNU6-255P-201ENST00000516957 105 ntBASIC4.3□□□□□ -1.72
LIG1P18858 MRPS36P4-201ENST00000534436 298 ntBASIC4.3□□□□□ -1.72
LIG1P18858 MDM2-232ENST00000544561 213 ntTSL 5 BASIC4.3□□□□□ -1.72
LIG1P18858 AC024153.1-201ENST00000603103 365 ntBASIC4.3□□□□□ -1.72
LIG1P18858 RPL23AP88-201ENST00000605759 454 ntBASIC4.3□□□□□ -1.72
LIG1P18858 SNORA62.6-201ENST00000606322 83 ntBASIC4.3□□□□□ -1.72
LIG1P18858 RMST_6.1-201ENST00000611980 203 ntBASIC4.3□□□□□ -1.72
LIG1P18858 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.3□□□□□ -1.72
LIG1P18858 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LIG1P18858 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC4.29□□□□□ -1.72
LIG1P18858 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
LIG1P18858 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 575.3 ms