Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNU6-346P-201ENST00000516288 111 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 RNA5SP143-201ENST00000516936 115 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 AC107016.1-201ENST00000550463 337 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 H3F3AP1-201ENST00000559984 334 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 AC020895.1-201ENST00000595362 272 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 AL162424.1-201ENST00000602325 221 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 AC011921.3-201ENST00000605540 361 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 SNORD113-5-201ENST00000607261 78 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 RMST_6.1-201ENST00000611980 203 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 AL590240.4-201ENST00000616908 390 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.65
CHMP3Q9Y3E7 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 Y_RNA.291-201ENST00000364886 113 ntBASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 RNU6-326P-201ENST00000365480 107 ntBASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 RNU1-139P-201ENST00000391307 165 ntBASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 AC009237.8-201ENST00000445492 379 ntBASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 AC109925.1-201ENST00000478069 331 ntBASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 RPL26P26-201ENST00000480251 434 ntBASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 RNU7-110P-201ENST00000516891 62 ntBASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.77□□□□□ -1.65
CHMP3Q9Y3E7 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 ZNF826P-207ENST00000622273 1910 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 RNA5SP502-201ENST00000362694 119 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 RNU6-942P-201ENST00000363002 107 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 RNU6-1020P-201ENST00000363684 107 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 SNORD115-32-201ENST00000364079 82 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 Y_RNA.418-201ENST00000384029 102 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 RNU6-140P-201ENST00000384566 108 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 RNU6-658P-201ENST00000384606 106 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 Y_RNA.569-201ENST00000384749 103 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 MIR518D-201ENST00000385014 87 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 AL590383.1-201ENST00000428602 75 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 AC073901.1-201ENST00000462471 408 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 AC026726.1-201ENST00000512859 601 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 RNU6-1114P-201ENST00000516022 107 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 RNA5SP309-201ENST00000516670 106 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 UBL5P4-201ENST00000562584 236 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 AC024153.1-201ENST00000603103 365 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 AL359854.1-201ENST00000614203 1594 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 uc_338.32-201ENST00000615087 172 ntBASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.76□□□□□ -1.65
CHMP3Q9Y3E7 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 SNORA73.2-201ENST00000364946 201 ntBASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 SNORA29-201ENST00000384183 140 ntBASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 MIR153-2-201ENST00000385225 87 ntBASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 RNU6ATAC15P-201ENST00000408279 121 ntBASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 HMGN2P21-201ENST00000447764 270 ntBASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 AC025445.1-201ENST00000502728 300 ntBASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 RNU6-703P-201ENST00000516946 107 ntBASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 AP004607.1-201ENST00000524456 203 ntBASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 AC027288.2-201ENST00000553028 243 ntBASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 MIR4423-201ENST00000580922 80 ntBASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 AC244505.7-201ENST00000599675 272 ntBASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 SNORA43.4-201ENST00000629559 138 ntBASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 AL034408.1-202ENST00000636088 415 ntBASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CHMP3Q9Y3E7 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
CHMP3Q9Y3E7 MFSD8-236ENST00000641509 4050 ntBASIC4.74□□□□□ -1.65
CHMP3Q9Y3E7 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CHMP3Q9Y3E7 FTLP6-201ENST00000355274 422 ntBASIC4.74□□□□□ -1.65
CHMP3Q9Y3E7 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.74□□□□□ -1.65
CHMP3Q9Y3E7 RNU6-1181P-201ENST00000384191 106 ntBASIC4.74□□□□□ -1.65
CHMP3Q9Y3E7 RNU6-21P-201ENST00000384710 107 ntBASIC4.74□□□□□ -1.65
CHMP3Q9Y3E7 MIR3074-201ENST00000384885 81 ntBASIC4.74□□□□□ -1.65
CHMP3Q9Y3E7 MIR199A2-201ENST00000385289 110 ntBASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms