Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 CYCSP39-201ENST00000565821 309 ntBASIC4.86□□□□□ -1.63
COL17A1Q9UMD9 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.86□□□□□ -1.63
COL17A1Q9UMD9 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL17A1Q9UMD9 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.86□□□□□ -1.63
COL17A1Q9UMD9 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 SNORA23-201ENST00000365128 182 ntBASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 Y_RNA.399-201ENST00000383955 105 ntBASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 SNORD70.1-201ENST00000391007 85 ntBASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 RPL30P3-201ENST00000424262 333 ntBASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 AL162725.1-201ENST00000435405 301 ntBASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 RPEP5-201ENST00000441137 268 ntBASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 EEF1B2P7-201ENST00000451177 676 ntBASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 RNU7-167P-201ENST00000459160 62 ntBASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 Y_RNA.713-201ENST00000517013 96 ntBASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 IGKV2D-36-201ENST00000518643 226 ntBASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 MIR4679-2-201ENST00000578358 77 ntBASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 AL158032.1-201ENST00000605401 106 ntBASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 AL359547.2-201ENST00000615810 418 ntBASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 MIR6130-201ENST00000619419 109 ntBASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
COL17A1Q9UMD9 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL17A1Q9UMD9 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
COL17A1Q9UMD9 RNU6-898P-201ENST00000365627 104 ntBASIC4.84□□□□□ -1.63
COL17A1Q9UMD9 AC019155.1-201ENST00000382242 574 ntBASIC4.84□□□□□ -1.63
COL17A1Q9UMD9 SNORA18.3-201ENST00000384122 132 ntBASIC4.84□□□□□ -1.63
COL17A1Q9UMD9 RPS29P13-201ENST00000402041 169 ntBASIC4.84□□□□□ -1.63
COL17A1Q9UMD9 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC4.84□□□□□ -1.63
COL17A1Q9UMD9 snoU13.26-201ENST00000459452 105 ntBASIC4.84□□□□□ -1.63
COL17A1Q9UMD9 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC4.84□□□□□ -1.63
COL17A1Q9UMD9 AP001086.1-201ENST00000494882 321 ntBASIC4.84□□□□□ -1.63
COL17A1Q9UMD9 RBBP4P6-201ENST00000508098 202 ntBASIC4.84□□□□□ -1.63
COL17A1Q9UMD9 RNU6-390P-201ENST00000516259 103 ntBASIC4.84□□□□□ -1.63
COL17A1Q9UMD9 AC034114.1-201ENST00000520293 285 ntBASIC4.84□□□□□ -1.63
COL17A1Q9UMD9 AC244205.2-202ENST00000635781 342 ntBASIC4.84□□□□□ -1.63
COL17A1Q9UMD9 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL17A1Q9UMD9 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC4.84□□□□□ -1.64
COL17A1Q9UMD9 AC068647.1-201ENST00000489539 2265 ntBASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 RNU6ATAC3P-201ENST00000387974 126 ntBASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 RNU6-293P-201ENST00000411259 106 ntBASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 RPLP0P7-201ENST00000416050 667 ntBASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 AC093106.2-201ENST00000428212 385 ntBASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 DYNLL1P5-201ENST00000467158 270 ntBASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 SNORA14.1-201ENST00000516113 141 ntBASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 RNU6-991P-201ENST00000516168 107 ntBASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 AC098826.3-201ENST00000603823 466 ntBASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 AL034351.1-201ENST00000605288 668 ntBASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 AC034102.8-201ENST00000615146 484 ntBASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 AC008725.1-201ENST00000605123 2263 ntBASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL17A1Q9UMD9 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 SNORA71.1-201ENST00000364523 117 ntBASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 RNY4P28-201ENST00000365281 93 ntBASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 RNU6-1130P-201ENST00000365434 107 ntBASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 SNORA67.4-201ENST00000384688 142 ntBASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 AL513477.1-202ENST00000417061 214 ntBASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 BX276092.3-201ENST00000424182 230 ntBASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 AL591704.1-201ENST00000432574 275 ntBASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 AC026801.1-201ENST00000497178 464 ntBASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 RNU4-57P-201ENST00000515980 135 ntBASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 CYCSP27-201ENST00000527643 293 ntBASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 AC079600.2-201ENST00000550076 130 ntBASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 DLEU2_2.2-201ENST00000615474 90 ntBASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 AL591926.4-201ENST00000616895 298 ntBASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 U73479.1-201ENST00000618062 168 ntBASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 AC107027.3-201ENST00000565095 3473 ntBASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 AC015813.6-201ENST00000624409 5808 ntBASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL17A1Q9UMD9 SNORD81.1-201ENST00000363064 77 ntBASIC4.81□□□□□ -1.64
COL17A1Q9UMD9 Y_RNA.233-201ENST00000364407 101 ntBASIC4.81□□□□□ -1.64
COL17A1Q9UMD9 RNU6-701P-201ENST00000384059 107 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms