Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.62□□□□□ -1.99
VPS28Q9UK41 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.62□□□□□ -1.99
VPS28Q9UK41 RPL39P29-201ENST00000447779 157 ntBASIC2.62□□□□□ -1.99
VPS28Q9UK41 AL031274.1-201ENST00000450334 232 ntBASIC2.62□□□□□ -1.99
VPS28Q9UK41 AC013470.1-201ENST00000453438 462 ntBASIC2.62□□□□□ -1.99
VPS28Q9UK41 AL139109.1-201ENST00000455491 297 ntBASIC2.62□□□□□ -1.99
VPS28Q9UK41 MTCO3P38-201ENST00000468910 766 ntBASIC2.62□□□□□ -1.99
VPS28Q9UK41 RNA5SP148-201ENST00000516527 94 ntBASIC2.62□□□□□ -1.99
VPS28Q9UK41 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.62□□□□□ -1.99
VPS28Q9UK41 OR11H5P-201ENST00000554039 926 ntBASIC2.62□□□□□ -1.99
VPS28Q9UK41 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.62□□□□□ -1.99
VPS28Q9UK41 AL512360.1-201ENST00000555346 234 ntBASIC2.62□□□□□ -1.99
VPS28Q9UK41 AC091135.1-201ENST00000585943 307 ntBASIC2.62□□□□□ -1.99
VPS28Q9UK41 AL670379.2-201ENST00000604983 252 ntBASIC2.62□□□□□ -1.99
VPS28Q9UK41 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS28Q9UK41 FO624990.1-201ENST00000636373 85 ntBASIC2.62□□□□□ -1.99
VPS28Q9UK41 AC099654.12-201ENST00000639868 649 ntBASIC2.62□□□□□ -1.99
VPS28Q9UK41 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
VPS28Q9UK41 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS28Q9UK41 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS28Q9UK41 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
VPS28Q9UK41 MIR449A-201ENST00000362113 91 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 RNU6-82P-201ENST00000363970 107 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 RNU4-66P-201ENST00000365199 138 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 RNU6-1222P-201ENST00000384615 107 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
VPS28Q9UK41 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
VPS28Q9UK41 CBX3P9-201ENST00000402326 552 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 RN7SKP158-201ENST00000410453 326 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 AL117339.3-201ENST00000418733 162 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS28Q9UK41 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
VPS28Q9UK41 RPS3P1-201ENST00000456781 192 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 TPTE2P5-203ENST00000458118 728 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 AC019235.1-201ENST00000503847 207 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.61□□□□□ -1.99
VPS28Q9UK41 RNU6-835P-201ENST00000516974 104 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 RNU6-586P-201ENST00000517265 104 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 CENPUP1-201ENST00000526649 1202 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 IMMP1LP2-201ENST00000552954 492 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 BNIP3P16-201ENST00000589779 534 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 VN1R80P-201ENST00000597126 338 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 AL159153.1-201ENST00000619688 317 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.61□□□□□ -1.99
VPS28Q9UK41 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.6□□□□□ -1.99
VPS28Q9UK41 RNU6-336P-201ENST00000364891 107 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 RNU6-1032P-201ENST00000384100 107 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 MIR544A-201ENST00000384855 91 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 MIR27B-201ENST00000385129 97 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS28Q9UK41 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.6□□□□□ -1.99
VPS28Q9UK41 MTND3P21-201ENST00000433774 331 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 CR769767.1-201ENST00000436337 346 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS28Q9UK41 AC091885.1-201ENST00000506658 268 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 RNU6-189P-201ENST00000516120 101 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 RNU6-506P-201ENST00000516553 94 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 AC027807.1-201ENST00000559921 996 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 HMGB1P33-201ENST00000563485 527 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 MIR4513-201ENST00000581077 86 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 VN1R107P-201ENST00000601784 209 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 RNU6-85P-201ENST00000605989 107 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 AC090517.3-201ENST00000625170 141 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.6□□□□□ -1.99
VPS28Q9UK41 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.6□□□□□ -1.99
VPS28Q9UK41 IGHVIII-44-202ENST00000636235 289 ntBASIC2.6□□□□□ -1.99
VPS28Q9UK41 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.6□□□□□ -1.99
VPS28Q9UK41 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
VPS28Q9UK41 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.59□□□□□ -1.99
VPS28Q9UK41 RNU6-428P-201ENST00000362942 107 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 U3.12-201ENST00000364498 214 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 SNORA67.1-201ENST00000364749 141 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 RNU6-38P-201ENST00000384085 107 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 RNU6-648P-201ENST00000410190 107 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 RNA5SP181-201ENST00000410246 98 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 RNU6-293P-201ENST00000411259 106 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 POLHP1-201ENST00000411806 470 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 AIMP1P2-201ENST00000425294 312 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS28Q9UK41 SEPT14P3-201ENST00000439401 183 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS28Q9UK41 AC009238.1-201ENST00000442165 424 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 AL732372.2-207ENST00000445840 183 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 AC009237.6-201ENST00000446969 424 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 SEPT14P2-201ENST00000453405 183 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 RNU6-333P-201ENST00000459117 107 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 RNU7-138P-201ENST00000459479 64 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 AC087884.1-201ENST00000469738 328 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.59□□□□□ -1.99
VPS28Q9UK41 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS28Q9UK41 RPL23AP94-201ENST00000512518 302 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 SEPT14P4-201ENST00000513445 186 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 RN7SKP24-201ENST00000515888 284 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 SNORA14.1-201ENST00000516113 141 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 RNA5SP320-201ENST00000516263 124 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.59□□□□□ -1.99
VPS28Q9UK41 FO082796.1-201ENST00000523795 183 ntBASIC2.59□□□□□ -1.99
VPS28Q9UK41 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS28Q9UK41 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms