Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 AC018630.3-201ENST00000542637 96 ntBASIC1.74□□□□□ -2.13
KLHL28Q9NXS3 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.74□□□□□ -2.13
KLHL28Q9NXS3 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.74□□□□□ -2.13
KLHL28Q9NXS3 AC109446.2-201ENST00000567872 497 ntBASIC1.74□□□□□ -2.13
KLHL28Q9NXS3 MIR548AB-201ENST00000584917 84 ntBASIC1.74□□□□□ -2.13
KLHL28Q9NXS3 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
KLHL28Q9NXS3 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.74□□□□□ -2.13
KLHL28Q9NXS3 AC063944.3-201ENST00000609969 533 ntBASIC1.74□□□□□ -2.13
KLHL28Q9NXS3 MIR6845-201ENST00000613182 61 ntBASIC1.74□□□□□ -2.13
KLHL28Q9NXS3 AC007792.1-201ENST00000623023 402 ntBASIC1.74□□□□□ -2.13
KLHL28Q9NXS3 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
KLHL28Q9NXS3 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
KLHL28Q9NXS3 AP000568.1-201ENST00000282964 442 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 RNU6-212P-201ENST00000362642 104 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 RNU5F-7P-201ENST00000363696 115 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 RNU6-944P-201ENST00000364023 107 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 RNA5SP465-201ENST00000391195 109 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 RAP1BP3-201ENST00000407180 549 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 MTND5P25-201ENST00000430499 799 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 HMGB1P31-201ENST00000437242 427 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 AC245102.2-201ENST00000448956 180 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 RPL30P6-201ENST00000475925 342 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 RPL23AP63-201ENST00000498752 471 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 MTCO3P9-201ENST00000506989 781 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 RNU1-86P-201ENST00000516108 154 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 RNU1-107P-201ENST00000516617 154 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 AC022616.3-201ENST00000523940 148 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 RPL21P5-201ENST00000554662 472 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 HSBP1P1-201ENST00000555205 166 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 SNRPGP19-201ENST00000603826 189 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 AL159153.1-201ENST00000619688 317 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 RMST_7.1-201ENST00000621935 268 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 AF246928.1-201ENST00000623768 87 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 ZNF72P-201ENST00000425869 1908 ntBASIC1.73□□□□□ -2.13
KLHL28Q9NXS3 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 MIR29B2-201ENST00000385055 81 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 SNORA26.9-201ENST00000391322 122 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 AL031577.2-201ENST00000404133 280 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 RNU2-8P-201ENST00000410727 190 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 RNA5SP111-201ENST00000411386 101 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 BTF3L4P1-201ENST00000413813 468 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 RPL21P90-201ENST00000415692 466 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 AL445567.1-201ENST00000439121 144 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 AL353752.1-201ENST00000454946 260 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 RN7SKP219-201ENST00000516825 296 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 AC110588.1-201ENST00000559699 137 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 MIR3915-201ENST00000578518 97 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 AC012065.4-201ENST00000602445 679 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 AC004908.3-201ENST00000610248 625 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 AC122133.1-201ENST00000613964 233 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 AC026585.1-201ENST00000619582 524 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 AC091304.6-201ENST00000619761 202 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 YWHAEP7-203ENST00000622054 312 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 AC007494.3-201ENST00000624660 743 ntBASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
KLHL28Q9NXS3 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.71□□□□□ -2.13
KLHL28Q9NXS3 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 SNORD56.1-201ENST00000362913 68 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 Y_RNA.169-201ENST00000363745 96 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 SNORD14D-201ENST00000384390 87 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 RNU6-387P-201ENST00000411331 105 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 OR9R1P-201ENST00000412200 877 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 SRIP3-201ENST00000413200 219 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 CYCSP49-201ENST00000420810 319 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 BX510359.4-201ENST00000423750 193 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 MTND4P20-201ENST00000424125 869 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 CALM2P2-201ENST00000428512 440 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 UBE2D3P4-201ENST00000441973 436 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 TAF9P1-201ENST00000445421 515 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 AC007677.1-201ENST00000445757 515 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 TAF9P2-201ENST00000454958 515 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 AC107393.1-201ENST00000512403 346 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 PTP4A1P4-201ENST00000512479 322 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 RNU6-685P-201ENST00000517088 95 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 RNU6-1220P-201ENST00000517126 108 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 AK6P1-201ENST00000540219 478 ntBASIC1.71□□□□□ -2.14
KLHL28Q9NXS3 AC024614.2-201ENST00000577584 372 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 170.7 ms