Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RNA5SP139-201ENST00000364340 117 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 SNORD42.2-201ENST00000365570 69 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 RNU6-1027P-201ENST00000383998 107 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 MIR517A-201ENST00000385001 87 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 MIR634-201ENST00000385208 97 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.47□□□□□ -1.85
SMARCA1P28370 U3.37-201ENST00000408528 213 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 RNU6-325P-201ENST00000411132 105 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 BPY2DP-201ENST00000422208 265 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.47□□□□□ -1.85
SMARCA1P28370 AC013470.1-201ENST00000453438 462 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 ELOCP24-201ENST00000456370 334 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.47□□□□□ -1.85
SMARCA1P28370 RN7SKP43-201ENST00000516173 320 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 Y_RNA.708-201ENST00000516950 96 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 NACAP3-201ENST00000552100 481 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.47□□□□□ -1.85
SMARCA1P28370 HMGN2P15-201ENST00000585707 270 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.47□□□□□ -1.85
SMARCA1P28370 AL451007.1-201ENST00000595491 289 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 AC011494.1-201ENST00000596454 237 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 AP000787.2-201ENST00000604432 568 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 AC080078.3-201ENST00000605407 463 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 AL133215.3-201ENST00000609801 448 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.47□□□□□ -1.85
SMARCA1P28370 MIR6134-201ENST00000617606 109 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 AC007318.2-201ENST00000620999 243 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 AC090617.7-201ENST00000623952 126 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
SMARCA1P28370 AC000403.1-201ENST00000613696 3585 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.47□□□□□ -1.85
SMARCA1P28370 RNU6-78P-201ENST00000362897 107 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 RNU6-428P-201ENST00000362942 107 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 RNU6-942P-201ENST00000363002 107 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 Y_RNA.132-201ENST00000363421 102 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 Y_RNA.187-201ENST00000363918 113 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 RNU6-474P-201ENST00000384243 107 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 RNU6-842P-201ENST00000384269 107 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 RNU6-293P-201ENST00000411259 106 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.46□□□□□ -1.86
SMARCA1P28370 AC236972.1-201ENST00000433225 199 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.46□□□□□ -1.86
SMARCA1P28370 PCMTD1P1-201ENST00000455560 355 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 Y_RNA.639-201ENST00000458981 102 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 Y_RNA.653-201ENST00000459091 95 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 RPS26P21-201ENST00000475397 348 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 RPL7P42-201ENST00000481005 679 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.46□□□□□ -1.86
SMARCA1P28370 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.46□□□□□ -1.86
SMARCA1P28370 MTCYBP40-201ENST00000509390 1135 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.46□□□□□ -1.86
SMARCA1P28370 AC093303.1-201ENST00000514549 295 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 RNU6-1170P-201ENST00000515974 106 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 AC107016.2-201ENST00000547968 190 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.46□□□□□ -1.86
SMARCA1P28370 CPDP1-201ENST00000579660 283 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.46□□□□□ -1.86
SMARCA1P28370 AC020895.1-201ENST00000595362 272 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 AL162274.2-201ENST00000614406 332 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 AC090971.5-201ENST00000621102 293 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 U4.7-201ENST00000638126 106 ntBASIC3.46□□□□□ -1.86
SMARCA1P28370 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
SMARCA1P28370 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
SMARCA1P28370 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SMARCA1P28370 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
SMARCA1P28370 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SMARCA1P28370 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SMARCA1P28370 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
SMARCA1P28370 MIR369-201ENST00000362155 70 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 RNU1-105P-201ENST00000363470 161 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 MIR128-1-201ENST00000384921 82 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 NDUFB4P4-201ENST00000404822 243 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 MIR1302-11-201ENST00000408051 138 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 MIR1302-9-201ENST00000408365 138 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 MIR1302-10-201ENST00000408734 138 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 HIGD1AP2-201ENST00000446367 280 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 HMGN2P10-201ENST00000448085 265 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
SMARCA1P28370 BTF3P15-201ENST00000455606 336 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 RNU6-1037P-201ENST00000459571 107 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 RN7SL283P-201ENST00000489055 303 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 AC097473.1-201ENST00000508142 408 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 PTP4A1P4-201ENST00000512479 322 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.45□□□□□ -1.86
SMARCA1P28370 RNA5SP385-201ENST00000515947 110 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 SNORA43.2-201ENST00000516652 128 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 RN7SKP272-201ENST00000516988 232 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 SNORA31.26-201ENST00000517250 137 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 AC009812.2-201ENST00000517657 457 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 AC109479.2-201ENST00000517842 174 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 AC245166.1-201ENST00000521012 253 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.45□□□□□ -1.86
SMARCA1P28370 MIR4506-201ENST00000584693 77 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.45□□□□□ -1.86
SMARCA1P28370 MIR1302-2-201ENST00000607096 138 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 SCARNA4-202ENST00000625402 129 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 MTND4P23-201ENST00000447723 1363 ntBASIC3.45□□□□□ -1.86
SMARCA1P28370 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 332.1 ms