Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.33□□□□□ -2.04
VIMP08670 AC007792.1-201ENST00000623023 402 ntBASIC2.33□□□□□ -2.04
VIMP08670 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.33□□□□□ -2.04
VIMP08670 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.33□□□□□ -2.04
VIMP08670 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
VIMP08670 MTND4P1-201ENST00000457501 1466 ntBASIC2.33□□□□□ -2.04
VIMP08670 AC002543.1-201ENST00000299783 1954 ntBASIC2.32□□□□□ -2.04
VIMP08670 RNU4-75P-201ENST00000364621 146 ntBASIC2.32□□□□□ -2.04
VIMP08670 RNU1-148P-201ENST00000384472 162 ntBASIC2.32□□□□□ -2.04
VIMP08670 AL360182.1-201ENST00000397433 468 ntBASIC2.32□□□□□ -2.04
VIMP08670 AL591034.2-201ENST00000402839 359 ntBASIC2.32□□□□□ -2.04
VIMP08670 RN7SKP158-201ENST00000410453 326 ntBASIC2.32□□□□□ -2.04
VIMP08670 AC063976.3-201ENST00000426849 329 ntBASIC2.32□□□□□ -2.04
VIMP08670 SRIP2-201ENST00000428470 166 ntBASIC2.32□□□□□ -2.04
VIMP08670 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.32□□□□□ -2.04
VIMP08670 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.32□□□□□ -2.04
VIMP08670 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.32□□□□□ -2.04
VIMP08670 snoU13.14-201ENST00000459372 104 ntBASIC2.32□□□□□ -2.04
VIMP08670 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.32□□□□□ -2.04
VIMP08670 RPL9P6-201ENST00000492764 598 ntBASIC2.32□□□□□ -2.04
VIMP08670 AC107401.1-201ENST00000503426 685 ntBASIC2.32□□□□□ -2.04
VIMP08670 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.32□□□□□ -2.04
VIMP08670 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.32□□□□□ -2.04
VIMP08670 AP001893.2-201ENST00000526949 202 ntBASIC2.32□□□□□ -2.04
VIMP08670 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.32□□□□□ -2.04
VIMP08670 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.32□□□□□ -2.04
VIMP08670 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.32□□□□□ -2.04
VIMP08670 MIR4424-201ENST00000585257 86 ntBASIC2.32□□□□□ -2.04
VIMP08670 APOOP1-201ENST00000604695 592 ntBASIC2.32□□□□□ -2.04
VIMP08670 HULC.1-201ENST00000612720 240 ntBASIC2.32□□□□□ -2.04
VIMP08670 AC008121.3-201ENST00000618726 433 ntBASIC2.32□□□□□ -2.04
VIMP08670 AC124864.2-201ENST00000624736 186 ntBASIC2.32□□□□□ -2.04
VIMP08670 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.32□□□□□ -2.04
VIMP08670 RNU6-428P-201ENST00000362942 107 ntBASIC2.31□□□□□ -2.04
VIMP08670 RNU6-1210P-201ENST00000363775 107 ntBASIC2.31□□□□□ -2.04
VIMP08670 SNORA16B-201ENST00000364674 135 ntBASIC2.31□□□□□ -2.04
VIMP08670 MIR544A-201ENST00000384855 91 ntBASIC2.31□□□□□ -2.04
VIMP08670 MIR27B-201ENST00000385129 97 ntBASIC2.31□□□□□ -2.04
VIMP08670 MTCO3P40-201ENST00000392516 676 ntBASIC2.31□□□□□ -2.04
VIMP08670 RNU2-40P-201ENST00000410833 196 ntBASIC2.31□□□□□ -2.04
VIMP08670 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.31□□□□□ -2.04
VIMP08670 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.31□□□□□ -2.04
VIMP08670 COTL1P1-201ENST00000422309 375 ntBASIC2.31□□□□□ -2.04
VIMP08670 DLGAP5P1-201ENST00000430307 464 ntBASIC2.31□□□□□ -2.04
VIMP08670 AC107083.1-201ENST00000439643 279 ntBASIC2.31□□□□□ -2.04
VIMP08670 AC124916.1-201ENST00000444020 547 ntBASIC2.31□□□□□ -2.04
VIMP08670 RPL39P29-201ENST00000447779 157 ntBASIC2.31□□□□□ -2.04
VIMP08670 SRRM1P2-201ENST00000464531 1192 ntBASIC2.31□□□□□ -2.04
VIMP08670 AC097462.2-201ENST00000504623 481 ntBASIC2.31□□□□□ -2.04
VIMP08670 AC079140.5-201ENST00000507882 310 ntBASIC2.31□□□□□ -2.04
VIMP08670 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.31□□□□□ -2.04
VIMP08670 RN7SKP24-201ENST00000515888 284 ntBASIC2.31□□□□□ -2.04
VIMP08670 SNORA48.11-201ENST00000517015 89 ntBASIC2.31□□□□□ -2.04
VIMP08670 RNU6-586P-201ENST00000517265 104 ntBASIC2.31□□□□□ -2.04
VIMP08670 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.31□□□□□ -2.04
VIMP08670 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.31□□□□□ -2.04
VIMP08670 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.31□□□□□ -2.04
VIMP08670 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
VIMP08670 IMMP1LP2-201ENST00000552954 492 ntBASIC2.31□□□□□ -2.04
VIMP08670 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.31□□□□□ -2.04
VIMP08670 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.31□□□□□ -2.04
VIMP08670 MIR4448-201ENST00000584360 86 ntBASIC2.31□□□□□ -2.04
VIMP08670 Z82243.1-201ENST00000609432 473 ntBASIC2.31□□□□□ -2.04
VIMP08670 AC135507.2-201ENST00000612443 309 ntBASIC2.31□□□□□ -2.04
VIMP08670 AL159153.1-201ENST00000619688 317 ntBASIC2.31□□□□□ -2.04
VIMP08670 AC073534.2-201ENST00000620377 381 ntBASIC2.31□□□□□ -2.04
VIMP08670 AC090517.3-201ENST00000625170 141 ntBASIC2.31□□□□□ -2.04
VIMP08670 AL137790.1-201ENST00000634283 177 ntBASIC2.31□□□□□ -2.04
VIMP08670 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.31□□□□□ -2.04
VIMP08670 AC131280.1-202ENST00000624067 4211 ntBASIC2.31□□□□□ -2.04
VIMP08670 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.3□□□□□ -2.04
VIMP08670 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
VIMP08670 RNU1-23P-201ENST00000363361 144 ntBASIC2.3□□□□□ -2.04
VIMP08670 RNU6-1322P-201ENST00000364309 107 ntBASIC2.3□□□□□ -2.04
VIMP08670 RNU1-91P-201ENST00000364746 163 ntBASIC2.3□□□□□ -2.04
VIMP08670 RNU6-336P-201ENST00000364891 107 ntBASIC2.3□□□□□ -2.04
VIMP08670 Y_RNA.436-201ENST00000384097 102 ntBASIC2.3□□□□□ -2.04
VIMP08670 SNORD37.1-201ENST00000390968 65 ntBASIC2.3□□□□□ -2.04
VIMP08670 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.3□□□□□ -2.04
VIMP08670 VN1R108P-201ENST00000431580 830 ntBASIC2.3□□□□□ -2.04
VIMP08670 AL121601.2-201ENST00000438019 707 ntBASIC2.3□□□□□ -2.04
VIMP08670 AC009238.1-201ENST00000442165 424 ntBASIC2.3□□□□□ -2.04
VIMP08670 GPM6BP3-201ENST00000442797 145 ntBASIC2.3□□□□□ -2.04
VIMP08670 AC009237.6-201ENST00000446969 424 ntBASIC2.3□□□□□ -2.04
VIMP08670 PSPHP1-201ENST00000450062 261 ntBASIC2.3□□□□□ -2.04
VIMP08670 AL031274.1-201ENST00000450334 232 ntBASIC2.3□□□□□ -2.04
VIMP08670 AC087884.1-201ENST00000469738 328 ntBASIC2.3□□□□□ -2.04
VIMP08670 AC083798.1-201ENST00000472671 131 ntBASIC2.3□□□□□ -2.04
VIMP08670 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.3□□□□□ -2.04
VIMP08670 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.3□□□□□ -2.04
VIMP08670 AC109479.2-201ENST00000517842 174 ntBASIC2.3□□□□□ -2.04
VIMP08670 AL138976.2-201ENST00000563989 694 ntBASIC2.3□□□□□ -2.04
VIMP08670 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.3□□□□□ -2.04
VIMP08670 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.3□□□□□ -2.04
VIMP08670 AC103987.3-201ENST00000582071 292 ntBASIC2.3□□□□□ -2.04
VIMP08670 MIR3941-201ENST00000582572 103 ntBASIC2.3□□□□□ -2.04
VIMP08670 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.3□□□□□ -2.04
VIMP08670 AL136363.2-201ENST00000604173 851 ntBASIC2.3□□□□□ -2.04
VIMP08670 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.3□□□□□ -2.04
VIMP08670 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 124.4 ms