Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC091932.3-201ENST00000624223 323 ntBASIC4.49□□□□□ -1.69
USP3Q9Y6I4 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP3Q9Y6I4 IL33-203ENST00000456383 2501 ntTSL 5 BASIC4.49□□□□□ -1.69
USP3Q9Y6I4 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.49□□□□□ -1.69
USP3Q9Y6I4 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP3Q9Y6I4 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.49□□□□□ -1.69
USP3Q9Y6I4 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 AL133243.3-201ENST00000617415 3004 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 Y_RNA.182-201ENST00000363880 111 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 RNU6-884P-201ENST00000363889 107 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 RNU6-275P-201ENST00000364910 107 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 EBAG9P1-201ENST00000418955 543 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 RPL39P29-201ENST00000447779 157 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 AP000705.1-201ENST00000454567 350 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 AC010409.1-201ENST00000487382 476 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 AC023141.12-201ENST00000512399 199 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 PARP1P2-201ENST00000556806 195 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 MTND6P33-201ENST00000571794 183 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 MIR3136-201ENST00000583498 78 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 AL451007.1-201ENST00000595491 289 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 AL591034.3-201ENST00000605511 685 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 MIR8059-201ENST00000620427 81 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 MIR3674-201ENST00000636576 68 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.48□□□□□ -1.69
USP3Q9Y6I4 MAPK10-320ENST00000641462 6696 ntBASIC4.48□□□□□ -1.69
USP3Q9Y6I4 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
USP3Q9Y6I4 AC002543.1-201ENST00000299783 1954 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
USP3Q9Y6I4 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
USP3Q9Y6I4 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
USP3Q9Y6I4 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
USP3Q9Y6I4 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
USP3Q9Y6I4 MIR383-201ENST00000362257 73 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 RNA5SP28-201ENST00000363841 119 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 RNU6-376P-201ENST00000384731 106 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 RNU6-239P-201ENST00000390990 99 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
USP3Q9Y6I4 RNU2-2P-201ENST00000410396 191 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 RNA5SP475-201ENST00000410568 110 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 AC009963.1-201ENST00000417265 157 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 SEPT7P4-201ENST00000437076 306 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.47□□□□□ -1.69
USP3Q9Y6I4 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC4.47□□□□□ -1.69
USP3Q9Y6I4 AC099522.1-202ENST00000514718 367 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 RNA5SP468-201ENST00000516782 93 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.47□□□□□ -1.69
USP3Q9Y6I4 AC090897.2-201ENST00000581715 130 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 SNRPGP20-201ENST00000604477 205 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 ARF4P1-201ENST00000605447 541 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 RNU2-4P-201ENST00000606190 192 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 U2.15-201ENST00000611544 191 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 U2.16-201ENST00000613119 191 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 U2.12-201ENST00000613778 191 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 U2.9-201ENST00000615427 191 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 U2.11-201ENST00000616345 191 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 U2.2-201ENST00000616535 191 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 U2.3-201ENST00000617785 191 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 U2.19-201ENST00000618602 191 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 RNU2-1-201ENST00000618664 191 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 U2.6-201ENST00000619225 191 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 U2.5-201ENST00000619465 191 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 U2.10-201ENST00000620268 191 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.47□□□□□ -1.69
USP3Q9Y6I4 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
USP3Q9Y6I4 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
USP3Q9Y6I4 AC092435.4-201ENST00000623012 4159 ntBASIC4.47□□□□□ -1.69
USP3Q9Y6I4 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.47□□□□□ -1.69
USP3Q9Y6I4 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
USP3Q9Y6I4 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
USP3Q9Y6I4 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.69
USP3Q9Y6I4 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
USP3Q9Y6I4 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
USP3Q9Y6I4 AC007656.2-201ENST00000624902 4547 ntBASIC4.46□□□□□ -1.7
USP3Q9Y6I4 RNU6-1199P-201ENST00000411249 104 ntBASIC4.46□□□□□ -1.7
USP3Q9Y6I4 ELOCP21-201ENST00000412558 336 ntBASIC4.46□□□□□ -1.7
USP3Q9Y6I4 IFNA11P-201ENST00000446352 526 ntBASIC4.46□□□□□ -1.7
USP3Q9Y6I4 HMGN2P10-201ENST00000448085 265 ntBASIC4.46□□□□□ -1.7
USP3Q9Y6I4 RPS20P10-201ENST00000451209 253 ntBASIC4.46□□□□□ -1.7
USP3Q9Y6I4 RPS4XP13-201ENST00000483219 789 ntBASIC4.46□□□□□ -1.7
USP3Q9Y6I4 AC078817.1-201ENST00000492623 435 ntBASIC4.46□□□□□ -1.7
USP3Q9Y6I4 RPS27AP10-201ENST00000496103 208 ntBASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms