Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 SCARNA14-201ENST00000516903 136 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 RNA5SP291-201ENST00000517222 105 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 SCARNA4-202ENST00000625402 129 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 AL079305.1-201ENST00000623159 3008 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 RNY4P28-201ENST00000365281 93 ntBASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 MIR200C-201ENST00000384980 68 ntBASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 RPS4XP3-201ENST00000398541 413 ntBASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 RNA5SP44-201ENST00000410446 133 ntBASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 RNA5SP104-201ENST00000410989 118 ntBASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 AL133547.1-201ENST00000448546 220 ntBASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 RPL23AP49-201ENST00000492925 468 ntBASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 AC027309.3-201ENST00000623419 351 ntBASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 AC132825.6-201ENST00000638861 357 ntBASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 LINC02471-203ENST00000641941 4752 ntBASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
CHMP3Q9Y3E7 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 AC135776.4-201ENST00000624300 1904 ntBASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 RNU6-858P-201ENST00000362436 107 ntBASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 Y_RNA.292-201ENST00000364904 97 ntBASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 U1.1-201ENST00000384101 164 ntBASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 U8.11-201ENST00000384699 133 ntBASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 U8.12-201ENST00000384701 133 ntBASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 RNA5SP213-201ENST00000391031 106 ntBASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 MIR1290-201ENST00000408735 78 ntBASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 RNA5SP39-201ENST00000411245 120 ntBASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 RAB9AP3-201ENST00000412737 573 ntBASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 RAB9AP1-201ENST00000449393 573 ntBASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 U8.18-201ENST00000459285 133 ntBASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 AC012442.3-202ENST00000636742 206 ntBASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CHMP3Q9Y3E7 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 Y_RNA.170-201ENST00000363746 110 ntBASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 RNU6-1286P-201ENST00000383871 107 ntBASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 MIR487A-201ENST00000385009 80 ntBASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 SNORD12B-201ENST00000410433 91 ntBASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 AL139247.1-201ENST00000422768 325 ntBASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 AC243964.1-201ENST00000441814 261 ntBASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 SSXP4-201ENST00000451349 245 ntBASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 AC087477.1-201ENST00000465747 340 ntBASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 SNORA31.8-201ENST00000516327 108 ntBASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 RNU2-31P-201ENST00000516954 155 ntBASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 RNU6-1183P-201ENST00000517054 60 ntBASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 Z83818.1-201ENST00000603584 150 ntBASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.79□□□□□ -1.64
CHMP3Q9Y3E7 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 Y_RNA.122-201ENST00000363331 96 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 RNA5SP240-201ENST00000365355 128 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 RNU6-898P-201ENST00000365627 104 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 RNA5SP171-201ENST00000391071 115 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 SNORA53-201ENST00000391141 249 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 U3.37-201ENST00000408528 213 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 AL591419.1-201ENST00000427423 339 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 Z82210.1-201ENST00000440037 231 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 RPL31P61-201ENST00000496160 376 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 RPL7P47-201ENST00000497299 556 ntBASIC4.78□□□□□ -1.64
CHMP3Q9Y3E7 RNU6-1278P-201ENST00000516130 107 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms