Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC4.19□□□□□ -1.74
DDX41Q9UJV9 AC021146.2-201ENST00000504736 556 ntBASIC4.19□□□□□ -1.74
DDX41Q9UJV9 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC4.19□□□□□ -1.74
DDX41Q9UJV9 SNORA31.1-201ENST00000515993 133 ntBASIC4.19□□□□□ -1.74
DDX41Q9UJV9 SNORA31.5-201ENST00000516190 133 ntBASIC4.19□□□□□ -1.74
DDX41Q9UJV9 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC4.19□□□□□ -1.74
DDX41Q9UJV9 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.19□□□□□ -1.74
DDX41Q9UJV9 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC4.19□□□□□ -1.74
DDX41Q9UJV9 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.19□□□□□ -1.74
DDX41Q9UJV9 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.19□□□□□ -1.74
DDX41Q9UJV9 AL137849.1-201ENST00000604767 169 ntBASIC4.19□□□□□ -1.74
DDX41Q9UJV9 U3.45-201ENST00000607547 219 ntBASIC4.19□□□□□ -1.74
DDX41Q9UJV9 MIR1244-1-201ENST00000612829 85 ntBASIC4.19□□□□□ -1.74
DDX41Q9UJV9 MIR1244-3-201ENST00000635744 85 ntBASIC4.19□□□□□ -1.74
DDX41Q9UJV9 MIR1244-2-201ENST00000636449 85 ntBASIC4.19□□□□□ -1.74
DDX41Q9UJV9 MIR1244-4-202ENST00000636813 85 ntBASIC4.19□□□□□ -1.74
DDX41Q9UJV9 U6.105-201ENST00000637379 88 ntBASIC4.19□□□□□ -1.74
DDX41Q9UJV9 AC233981.2-201ENST00000611524 1614 ntBASIC4.19□□□□□ -1.74
DDX41Q9UJV9 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
DDX41Q9UJV9 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
DDX41Q9UJV9 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
DDX41Q9UJV9 MTND5P27-201ENST00000428871 1720 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 AC233263.6-201ENST00000631132 1963 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 CEP170P1-201ENST00000502249 4587 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 MFSD8-236ENST00000641509 4050 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 Y_RNA.144-201ENST00000363521 113 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 SNORD14.1-201ENST00000365609 90 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 RNU6-843P-201ENST00000384454 104 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 Y_RNA.526-201ENST00000384572 110 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 RNU6-1105P-201ENST00000384774 107 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 RNA5SP424-201ENST00000390988 115 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 RNU6-1077P-201ENST00000410506 102 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 AL358176.2-201ENST00000425769 204 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 AC096644.2-201ENST00000429278 159 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 RN7SL330P-201ENST00000469709 307 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 AC107626.1-201ENST00000471084 183 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 SNORD19.2-201ENST00000516978 73 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 NDUFB9P3-201ENST00000521269 501 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 POC1B-211ENST00000549504 581 ntTSL 5 BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 AC006077.1-201ENST00000604746 343 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 AC007179.3-201ENST00000604976 235 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 AC091953.5-201ENST00000622919 233 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 AC091812.1-201ENST00000432235 1948 ntBASIC4.18□□□□□ -1.74
DDX41Q9UJV9 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
DDX41Q9UJV9 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
DDX41Q9UJV9 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
DDX41Q9UJV9 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
DDX41Q9UJV9 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC4.17□□□□□ -1.74
DDX41Q9UJV9 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.17□□□□□ -1.74
DDX41Q9UJV9 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
DDX41Q9UJV9 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
DDX41Q9UJV9 RNU6-1309P-201ENST00000363305 108 ntBASIC4.17□□□□□ -1.74
DDX41Q9UJV9 RNU4-42P-201ENST00000364738 142 ntBASIC4.17□□□□□ -1.74
DDX41Q9UJV9 MIR628-201ENST00000385229 95 ntBASIC4.17□□□□□ -1.74
DDX41Q9UJV9 SNORA69.1-201ENST00000390904 137 ntBASIC4.17□□□□□ -1.74
DDX41Q9UJV9 SAR1AP2-201ENST00000392696 594 ntBASIC4.17□□□□□ -1.74
DDX41Q9UJV9 RNA5SP494-201ENST00000410653 129 ntBASIC4.17□□□□□ -1.74
DDX41Q9UJV9 AC112492.4-201ENST00000456549 352 ntBASIC4.17□□□□□ -1.74
DDX41Q9UJV9 SNORA40.14-201ENST00000516543 86 ntBASIC4.17□□□□□ -1.74
DDX41Q9UJV9 IGHVII-53-1-201ENST00000519538 255 ntBASIC4.17□□□□□ -1.74
DDX41Q9UJV9 AC022616.4-201ENST00000522985 181 ntBASIC4.17□□□□□ -1.74
DDX41Q9UJV9 VN1R91P-201ENST00000594377 169 ntBASIC4.17□□□□□ -1.74
DDX41Q9UJV9 AC104695.3-201ENST00000604052 296 ntBASIC4.17□□□□□ -1.74
DDX41Q9UJV9 AC100812.1-201ENST00000607622 580 ntBASIC4.17□□□□□ -1.74
DDX41Q9UJV9 AL132822.1-201ENST00000617063 513 ntBASIC4.17□□□□□ -1.74
DDX41Q9UJV9 MIR4272-201ENST00000635924 64 ntBASIC4.17□□□□□ -1.74
DDX41Q9UJV9 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.17□□□□□ -1.74
DDX41Q9UJV9 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.16□□□□□ -1.74
DDX41Q9UJV9 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
DDX41Q9UJV9 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
DDX41Q9UJV9 Y_RNA.152-201ENST00000363578 100 ntBASIC4.16□□□□□ -1.74
DDX41Q9UJV9 RNU6-283P-201ENST00000364788 107 ntBASIC4.16□□□□□ -1.74
DDX41Q9UJV9 RNU4-9P-201ENST00000364951 139 ntBASIC4.16□□□□□ -1.74
DDX41Q9UJV9 RNU1-140P-201ENST00000365040 165 ntBASIC4.16□□□□□ -1.74
DDX41Q9UJV9 Y_RNA.380-201ENST00000365663 111 ntBASIC4.16□□□□□ -1.74
DDX41Q9UJV9 RNU6-968P-201ENST00000384076 107 ntBASIC4.16□□□□□ -1.74
DDX41Q9UJV9 Y_RNA.485-201ENST00000384395 102 ntBASIC4.16□□□□□ -1.74
DDX41Q9UJV9 RNU6-19P-201ENST00000384718 107 ntBASIC4.16□□□□□ -1.74
DDX41Q9UJV9 MIR218-2-201ENST00000385006 110 ntBASIC4.16□□□□□ -1.74
DDX41Q9UJV9 MIR34B-201ENST00000385076 84 ntBASIC4.16□□□□□ -1.74
DDX41Q9UJV9 RNA5SP390-201ENST00000410191 113 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 174.9 ms