Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 PSMA3P-201ENST00000555485 635 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 AC098848.2-201ENST00000588023 330 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 AC073539.2-201ENST00000597113 165 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 Z84480.1-201ENST00000605131 311 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 AC096772.1-201ENST00000609146 564 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 RNU1-57P-201ENST00000384491 166 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 MIR186-201ENST00000384988 86 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 MIR561-201ENST00000385216 97 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 MTCO3P5-201ENST00000433620 714 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 NDUFB1P2-201ENST00000449477 176 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 MTND3P7-201ENST00000474435 343 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 AC107393.1-201ENST00000512403 346 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 RNU2-53P-201ENST00000516257 147 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 RNU6-685P-201ENST00000517088 95 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 AP004607.1-201ENST00000524456 203 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 NDUFA5P6-201ENST00000542110 379 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 CR383656.8-201ENST00000549046 145 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 AC093249.1-201ENST00000567049 203 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 CLIC4P2-201ENST00000601934 717 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 AC073410.2-201ENST00000603240 332 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 MIR98-201ENST00000606724 119 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 AC063944.3-201ENST00000609969 533 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 AC108479.2-201ENST00000617314 601 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 AL603755.1-201ENST00000619504 163 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 MIR3529-201ENST00000637713 78 ntBASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.54□□□□□ -2.16
EXOSC4Q9NPD3 Y_RNA.40-201ENST00000362645 93 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 U3.4-201ENST00000363352 213 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 SNORA62.1-201ENST00000364287 154 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 Y_RNA.367-201ENST00000365544 101 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 SNORA70B-201ENST00000384210 135 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 SNORA8-201ENST00000384574 139 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 RNY3P10-201ENST00000384764 102 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 MIR1-2-201ENST00000384961 85 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 AC244636.1-201ENST00000421152 228 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 HMGB1P31-201ENST00000437242 427 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 RPL23AP6-201ENST00000446637 472 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 AL162395.1-201ENST00000457882 422 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 SNORA59A-201ENST00000459326 152 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 RPL30P12-201ENST00000474666 353 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 SNORA43.2-201ENST00000516652 128 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 SNORA18.6-201ENST00000516792 115 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 AP002453.2-201ENST00000533503 320 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 AC145350.1-201ENST00000567426 208 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 AC104581.2-201ENST00000572227 430 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 AC005296.1-201ENST00000616145 209 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 AC011155.2-201ENST00000623202 216 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 AC120349.3-201ENST00000624377 529 ntBASIC1.53□□□□□ -2.16
EXOSC4Q9NPD3 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.52□□□□□ -2.17
EXOSC4Q9NPD3 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
EXOSC4Q9NPD3 SNORD56.1-201ENST00000362913 68 ntBASIC1.52□□□□□ -2.17
EXOSC4Q9NPD3 RNU6-622P-201ENST00000384272 103 ntBASIC1.52□□□□□ -2.17
EXOSC4Q9NPD3 MIR23A-201ENST00000385245 73 ntBASIC1.52□□□□□ -2.17
EXOSC4Q9NPD3 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC1.52□□□□□ -2.17
EXOSC4Q9NPD3 MIR1283-2-201ENST00000408621 87 ntBASIC1.52□□□□□ -2.17
EXOSC4Q9NPD3 OR9R1P-201ENST00000412200 877 ntBASIC1.52□□□□□ -2.17
EXOSC4Q9NPD3 AC074117.2-201ENST00000417130 397 ntBASIC1.52□□□□□ -2.17
EXOSC4Q9NPD3 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.52□□□□□ -2.17
EXOSC4Q9NPD3 MTCYBP5-201ENST00000423752 1135 ntBASIC1.52□□□□□ -2.17
EXOSC4Q9NPD3 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.52□□□□□ -2.17
EXOSC4Q9NPD3 AL645568.3-201ENST00000433683 316 ntBASIC1.52□□□□□ -2.17
EXOSC4Q9NPD3 AC104058.1-201ENST00000448028 297 ntBASIC1.52□□□□□ -2.17
EXOSC4Q9NPD3 RPS29P21-201ENST00000496272 170 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms