Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNU6-750P-201ENST00000390946 107 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 RNA5SP494-201ENST00000410653 129 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 AL035423.1-201ENST00000420331 213 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 RPL23AP95-201ENST00000426806 265 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 MTND3P2-201ENST00000438452 342 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 AL031659.1-201ENST00000447075 539 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 AL353752.1-201ENST00000454946 260 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 U3.44-201ENST00000458938 192 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 RN7SL93P-201ENST00000463035 293 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 BTF3L4P4-201ENST00000506381 449 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 RNU1-95P-201ENST00000516357 160 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 RNU1-128P-201ENST00000516704 160 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 RN7SKP209-201ENST00000516888 304 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 HSPE1P4-201ENST00000550617 308 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 AC105137.2-201ENST00000569073 466 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 VN1R91P-201ENST00000594377 169 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 BRDTP1-201ENST00000605735 677 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 RNU6-91P-201ENST00000607774 107 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 AC096772.1-201ENST00000609146 564 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 AC007792.1-201ENST00000623023 402 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 AC012442.3-202ENST00000636742 206 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
TRIM39Q9HCM9 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
TRIM39Q9HCM9 AL353743.1-202ENST00000431724 1695 ntBASIC3.65□□□□□ -1.82
TRIM39Q9HCM9 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
TRIM39Q9HCM9 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
TRIM39Q9HCM9 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
TRIM39Q9HCM9 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
TRIM39Q9HCM9 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
TRIM39Q9HCM9 SNORD32A-201ENST00000364805 84 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 SNORA12.2-201ENST00000391040 156 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 MTCO3P19-201ENST00000415864 321 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 AC112492.4-201ENST00000456549 352 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 RPL7P47-201ENST00000497299 556 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 RNU5B-3P-201ENST00000516601 115 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 SNORA67.7-201ENST00000516664 135 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 SNORD59.2-201ENST00000516873 68 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 RNU6-1137P-201ENST00000517073 99 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 AC090897.2-201ENST00000581715 130 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 MIR3158-1-201ENST00000583596 81 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 RPL23AP78-201ENST00000599928 470 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 AC137590.2-201ENST00000619709 240 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 SCARNA4-201ENST00000629045 128 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 AC243829.7-201ENST00000633081 225 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 AL353746.1-201ENST00000566293 6881 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 AC002543.1-201ENST00000299783 1954 ntBASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.65□□□□□ -1.83
TRIM39Q9HCM9 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 RNA5SP51-201ENST00000364750 119 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 SNORD14.1-201ENST00000365609 90 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 Y_RNA.504-201ENST00000384481 104 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 MIR200C-201ENST00000384980 68 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 MIR591-201ENST00000385290 95 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 RNA5SP354-201ENST00000391247 136 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 PTMAP5-201ENST00000393073 333 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 RN7SKP27-201ENST00000410684 333 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 AC078809.1-201ENST00000427601 140 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 GPM6BP3-201ENST00000442797 145 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 RPL39P29-201ENST00000447779 157 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 RNU6-911P-201ENST00000516523 104 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 IGKV2-23-201ENST00000518729 323 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 AC022616.4-201ENST00000522985 181 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 AC115990.1-201ENST00000526957 301 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 AC006600.1-201ENST00000572529 153 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 MIR1254-2-201ENST00000579553 63 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 AP000942.4-201ENST00000604811 241 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 AL132822.1-201ENST00000617063 513 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 AC006133.1-201ENST00000617106 264 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms