Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 COX6CP14-201ENST00000469580 174 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 HMGN2P9-201ENST00000476875 229 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC0.57□□□□□ -2.32
FOXA3P55318 PSMC1P5-201ENST00000512850 177 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC0.57□□□□□ -2.32
FOXA3P55318 ACA64.5-201ENST00000516207 127 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 RNU6-64P-201ENST00000517119 105 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.57□□□□□ -2.32
FOXA3P55318 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC0.57□□□□□ -2.32
FOXA3P55318 AC021451.1-201ENST00000523498 1129 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 DEFB131D-201ENST00000526803 184 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 AL356057.1-201ENST00000533798 831 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
FOXA3P55318 MIR3912-201ENST00000577566 105 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC0.57□□□□□ -2.32
FOXA3P55318 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC0.57□□□□□ -2.32
FOXA3P55318 AC022022.2-201ENST00000602989 360 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 AC091895.1-201ENST00000624494 256 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 AC095038.3-201ENST00000634439 195 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC0.57□□□□□ -2.32
FOXA3P55318 LINC02555-201ENST00000563933 1951 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 Y_RNA.40-201ENST00000362645 93 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 RNU6-777P-201ENST00000364265 104 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 SNORD114-6-201ENST00000364393 72 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 MIR19A-201ENST00000384878 82 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 RNU6-482P-201ENST00000391068 107 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 AL357139.1-201ENST00000407792 426 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC0.56□□□□□ -2.32
FOXA3P55318 AC016831.2-201ENST00000417179 352 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC0.56□□□□□ -2.32
FOXA3P55318 MTND5P15-201ENST00000434246 349 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 AC005094.1-201ENST00000440420 368 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC0.56□□□□□ -2.32
FOXA3P55318 AL353718.1-201ENST00000451028 517 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 HSPE1P13-201ENST00000451143 297 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 RNA5SP269-201ENST00000459032 137 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC0.56□□□□□ -2.32
FOXA3P55318 RPL39P36-201ENST00000490784 156 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC0.56□□□□□ -2.32
FOXA3P55318 AC024589.1-201ENST00000512207 263 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 RN7SKP88-201ENST00000516847 250 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC0.56□□□□□ -2.32
FOXA3P55318 CYCSP23-201ENST00000519781 313 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
FOXA3P55318 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC0.56□□□□□ -2.32
FOXA3P55318 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.56□□□□□ -2.32
FOXA3P55318 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC0.56□□□□□ -2.32
FOXA3P55318 AL512347.1-201ENST00000566420 503 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 MTCYBP33-201ENST00000575007 1130 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 MIR3973-201ENST00000579824 107 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 MIR4524B-201ENST00000581569 115 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 VN1R87P-201ENST00000596706 487 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 AC069545.1-201ENST00000605671 358 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 7SK.8-201ENST00000612110 250 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 7SK.11-201ENST00000615477 250 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 AC063943.3-201ENST00000615562 356 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 7SK.13-201ENST00000622040 250 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 AC104985.3-201ENST00000623479 597 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 OR4G3P-201ENST00000633500 913 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 AL512643.1-201ENST00000635735 524 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 MIR6866-201ENST00000638146 69 ntBASIC0.56□□□□□ -2.32
FOXA3P55318 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC0.55□□□□□ -2.32
FOXA3P55318 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC0.55□□□□□ -2.32
FOXA3P55318 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
FOXA3P55318 snoU2_19.1-201ENST00000362361 80 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 RNU6-53P-201ENST00000365367 106 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.55□□□□□ -2.32
FOXA3P55318 RNU6-166P-201ENST00000384371 107 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 MIR301A-201ENST00000385261 86 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 RNU6-817P-201ENST00000391083 104 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.55□□□□□ -2.32
FOXA3P55318 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC0.55□□□□□ -2.32
FOXA3P55318 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.55□□□□□ -2.32
FOXA3P55318 RPS27AP8-201ENST00000452665 445 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 AL353752.1-201ENST00000454946 260 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 HMGB1P30-201ENST00000492455 606 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC0.55□□□□□ -2.32
FOXA3P55318 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC0.55□□□□□ -2.32
FOXA3P55318 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.55□□□□□ -2.32
FOXA3P55318 RNA5SP481-201ENST00000516814 122 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.55□□□□□ -2.32
FOXA3P55318 OR8K2P-201ENST00000524645 927 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC0.55□□□□□ -2.32
FOXA3P55318 HMGB1P33-201ENST00000563485 527 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 AL132657.2-201ENST00000564417 358 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 MTATP6P25-201ENST00000574491 261 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 AC078795.2-201ENST00000602835 1252 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 BNIP3P31-201ENST00000604515 566 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 AP000654.2-201ENST00000605633 586 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
FOXA3P55318 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC0.55□□□□□ -2.32
FOXA3P55318 AC023158.2-201ENST00000614876 543 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 AC120349.3-201ENST00000624377 529 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 AL163152.1-201ENST00000642001 374 ntBASIC0.55□□□□□ -2.32
FOXA3P55318 snoZ40.1-201ENST00000364540 72 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 Y_RNA.327-201ENST00000365201 102 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 SNORA4.3-201ENST00000365564 137 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.54□□□□□ -2.32
FOXA3P55318 FCF1P10-201ENST00000407590 479 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 Y_RNA.597-201ENST00000410463 100 ntBASIC0.54□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms