Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AC087499.8-201ENST00000578406 226 ntBASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 AL121772.2-201ENST00000614331 297 ntBASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 U6.99-201ENST00000637524 83 ntBASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 MAPK10-253ENST00000641010 4072 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 Y_RNA.44-201ENST00000362676 108 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 RNU4-90P-201ENST00000362773 141 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-879P-201ENST00000364328 108 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-47P-201ENST00000383866 107 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-17P-201ENST00000384245 107 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-18P-201ENST00000384527 107 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 MIR32-201ENST00000384965 70 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 PTMAP2-201ENST00000397627 327 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 SNORA3.3-201ENST00000408712 125 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-1140P-201ENST00000410517 106 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 AL356867.1-201ENST00000429623 299 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 AC005002.2-201ENST00000438228 269 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 SNORD116-28-201ENST00000516123 91 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 AC136601.2-201ENST00000604356 474 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 AP002826.1-201ENST00000608835 315 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 AC039056.2-201ENST00000622261 511 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 AC112200.1-201ENST00000625015 234 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 SCARNA4-201ENST00000629045 128 ntBASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.85□□□□□ -1.63
CHMP3Q9Y3E7 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 RNA5SP361-201ENST00000362686 118 ntBASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 MIR548I2-201ENST00000408348 149 ntBASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 RNA5SP306-201ENST00000411087 107 ntBASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 HMGB1P37-201ENST00000439613 609 ntBASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 AC016700.2-201ENST00000446011 156 ntBASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 AL353705.4-201ENST00000449661 238 ntBASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 AP000870.1-201ENST00000472927 406 ntBASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 VWA8P1-201ENST00000510889 176 ntBASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 MIR4782-201ENST00000577987 79 ntBASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 RPL23AP88-201ENST00000605759 454 ntBASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.84□□□□□ -1.63
CHMP3Q9Y3E7 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.84□□□□□ -1.64
CHMP3Q9Y3E7 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 RNU6-740P-201ENST00000364734 105 ntBASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 Z98749.2-208ENST00000381646 500 ntBASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 RNU6-843P-201ENST00000384454 104 ntBASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 AL033519.2-201ENST00000403958 392 ntBASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 EIF1P2-201ENST00000428233 350 ntBASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 SNRPEP9-201ENST00000436794 238 ntBASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 AL353748.1-201ENST00000440753 474 ntBASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 NDUFB4P10-201ENST00000452541 359 ntBASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 AP000873.1-201ENST00000463987 400 ntBASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 AF186996.7-201ENST00000492781 209 ntBASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 BTF3L4P4-201ENST00000506381 449 ntBASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 TRAV28-201ENST00000557548 323 ntBASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 CYCSP39-201ENST00000565821 309 ntBASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 AC021753.1-201ENST00000635724 168 ntBASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 AL359693.1-201ENST00000614959 2407 ntBASIC4.83□□□□□ -1.64
CHMP3Q9Y3E7 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 RNU6-527P-201ENST00000363425 104 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 SNORD63-201ENST00000384262 68 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 Y_RNA.504-201ENST00000384481 104 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 MIR325-201ENST00000385260 98 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 UBA52P6-201ENST00000399822 382 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 RN7SKP51-201ENST00000410781 304 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 RNA5SP31-201ENST00000411144 127 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 MTATP6P29-201ENST00000415057 132 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 AP000907.1-201ENST00000428428 510 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 AC083863.1-201ENST00000438811 231 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 RPS15AP7-201ENST00000439294 405 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 AL031659.1-201ENST00000447075 539 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 SNRPGP5-201ENST00000456003 220 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 snoU13.4-201ENST00000458916 104 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 UBE2CP3-201ENST00000502715 450 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 SEPT14P8-201ENST00000508026 178 ntBASIC4.82□□□□□ -1.64
CHMP3Q9Y3E7 SNORA43.2-201ENST00000516652 128 ntBASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms