Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 MTCO2P4-201ENST00000517968 247 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 OR5AQ1P-201ENST00000527596 927 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 SUB1P2-201ENST00000556401 297 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 AL391840.1-201ENST00000571144 367 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 AC073539.2-201ENST00000597113 165 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 AC109347.2-201ENST00000610220 349 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 AC091834.1-201ENST00000614543 472 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 AC024581.2-201ENST00000619986 252 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 AC244517.12-201ENST00000623581 663 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 SEPT14P19-203ENST00000633205 211 ntBASIC2.29□□□□□ -2.04
VPS54Q9P1Q0 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 RNU6-1029P-201ENST00000384109 107 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 CALM1P1-201ENST00000442082 433 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 RPL7P12-201ENST00000446719 750 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 AC090515.1-201ENST00000465295 476 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 RPL38P4-201ENST00000502376 214 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 AC079140.3-201ENST00000511111 550 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 Y_RNA.687-201ENST00000516558 91 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 RNU5B-3P-201ENST00000516601 115 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 RNU1-40P-201ENST00000516816 164 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 RNU1-97P-201ENST00000516872 164 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 MIR5692A1-201ENST00000580523 69 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 AC025449.1-201ENST00000603896 529 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 AL121917.1-203ENST00000605534 577 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 SNORD14A-201ENST00000606526 91 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 AC009509.4-201ENST00000619202 509 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 AC012640.5-201ENST00000623897 319 ntBASIC2.28□□□□□ -2.04
VPS54Q9P1Q0 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 RNA5SP138-201ENST00000365098 114 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 RNU4-48P-201ENST00000365559 182 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 DEFB108C-201ENST00000400154 252 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 GSTA9P-201ENST00000406231 611 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 SNORA11.2-201ENST00000408318 127 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 RNU4-26P-201ENST00000410270 107 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 HMGB3P2-201ENST00000411913 584 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 AC003685.2-201ENST00000422795 395 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 RPL7P43-201ENST00000478876 753 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 RN7SL429P-201ENST00000479090 223 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 RN7SL489P-201ENST00000486185 223 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 RN7SL327P-201ENST00000488659 223 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 MIR892C-201ENST00000516410 77 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 RNU6-1178P-201ENST00000516674 107 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 RNA5SP503-201ENST00000517047 117 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 AP005902.1-201ENST00000521358 186 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 AP002963.1-201ENST00000530590 184 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 AC079598.5-201ENST00000547460 117 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 MTCYBP33-201ENST00000575007 1130 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 AC068790.2-201ENST00000602601 557 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 AP001486.3-201ENST00000615334 372 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 RN7SL853P-201ENST00000617250 223 ntBASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
VPS54Q9P1Q0 AC138393.1-203ENST00000327086 343 ntBASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 RNA5SP37-201ENST00000365420 130 ntBASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 SNORA51.11-201ENST00000384442 131 ntBASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 CDK8P2-201ENST00000415020 547 ntBASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 AL353621.1-201ENST00000418219 243 ntBASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 AL596276.1-201ENST00000434465 418 ntBASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 AC022364.2-201ENST00000457963 554 ntBASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 MED28P2-201ENST00000475771 317 ntBASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 AC092436.1-201ENST00000506450 503 ntBASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 CBX3P7-201ENST00000532876 502 ntBASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 MIR3945-201ENST00000581853 98 ntBASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 MIR6840-201ENST00000611937 71 ntBASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 RBBP8P1-201ENST00000449447 1844 ntBASIC2.26□□□□□ -2.05
VPS54Q9P1Q0 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 AL596028.1-201ENST00000326971 197 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 Y_RNA.159-201ENST00000363674 87 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 SNORA3A-201ENST00000364113 130 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 RNU6-715P-201ENST00000365204 103 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms