Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 BTF3P15-201ENST00000455606 336 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 RPL9P9-202ENST00000466501 579 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 AC128713.1-201ENST00000471495 306 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.8□□□□□ -1.8
ERCC4Q92889 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.8□□□□□ -1.8
ERCC4Q92889 MTCO2P24-201ENST00000515611 426 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 SNORA64.4-201ENST00000516632 81 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 AC026403.1-201ENST00000518938 295 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 AC104027.1-201ENST00000521887 300 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
ERCC4Q92889 CBX3P8-201ENST00000532412 525 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 CYCSP39-201ENST00000565821 309 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 AC008121.1-201ENST00000603244 268 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 MIR3976-201ENST00000606807 139 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 SNORD58B-201ENST00000607313 66 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 MIR92B-201ENST00000607575 96 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 AC005046.1-201ENST00000608515 625 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 AL132822.1-201ENST00000617063 513 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
ERCC4Q92889 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.8□□□□□ -1.8
ERCC4Q92889 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
ERCC4Q92889 AL136164.4-201ENST00000625013 2135 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 AC005592.1-201ENST00000566527 1640 ntBASIC3.8□□□□□ -1.8
ERCC4Q92889 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.8□□□□□ -1.8
ERCC4Q92889 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.8□□□□□ -1.8
ERCC4Q92889 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.79□□□□□ -1.8
ERCC4Q92889 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.79□□□□□ -1.8
ERCC4Q92889 FAM35CP-201ENST00000554755 2470 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 RNU4-35P-201ENST00000362588 141 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 Z98749.2-208ENST00000381646 500 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 Y_RNA.527-201ENST00000384573 102 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 Y_RNA.577-201ENST00000384794 101 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 MIR449B-201ENST00000384995 97 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 MIR34A-201ENST00000385130 110 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 SNORD17-201ENST00000390930 237 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
ERCC4Q92889 AL138885.1-201ENST00000405921 675 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 AC007560.1-201ENST00000426912 237 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.79□□□□□ -1.8
ERCC4Q92889 RPL23AP22-201ENST00000437556 453 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.79□□□□□ -1.8
ERCC4Q92889 AL031274.1-201ENST00000450334 232 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 SSXP4-201ENST00000451349 245 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 AC015911.1-201ENST00000495111 156 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 SCARNA20.6-201ENST00000517251 106 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 AC068657.1-201ENST00000520807 306 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 MIR5696-201ENST00000578474 85 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 MIR4474-201ENST00000579189 78 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.79□□□□□ -1.8
ERCC4Q92889 AC004832.5-201ENST00000608677 401 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 AC019176.2-201ENST00000611579 315 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 AL034408.1-202ENST00000636088 415 ntBASIC3.79□□□□□ -1.8
ERCC4Q92889 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
ERCC4Q92889 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.79□□□□□ -1.8
ERCC4Q92889 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
ERCC4Q92889 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
ERCC4Q92889 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
ERCC4Q92889 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
ERCC4Q92889 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
ERCC4Q92889 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.78□□□□□ -1.8
ERCC4Q92889 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
ERCC4Q92889 RNU1-70P-201ENST00000362618 164 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 RNU6-778P-201ENST00000363269 103 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 Y_RNA.455-201ENST00000384230 98 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 RNU6-72P-201ENST00000384285 79 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 RNU6-933P-201ENST00000384424 107 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 MIR670-201ENST00000390142 98 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 RPS29P13-201ENST00000402041 169 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.78□□□□□ -1.8
ERCC4Q92889 RNU2-23P-201ENST00000410545 195 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 AL512844.2-201ENST00000433990 593 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 RPL23AP50-201ENST00000434149 455 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
ERCC4Q92889 MTATP6P7-201ENST00000453315 681 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 AC112492.4-201ENST00000456549 352 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 HMGN2P13-201ENST00000476476 274 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 RN7SKP18-201ENST00000516005 275 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 IGKV2-26-201ENST00000518305 343 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.78□□□□□ -1.8
ERCC4Q92889 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC3.78□□□□□ -1.8
ERCC4Q92889 AC113195.1-201ENST00000579952 141 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 MIR3922-201ENST00000585192 84 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 AC008739.3-201ENST00000603262 127 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 AC087588.2-201ENST00000617667 426 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 MIR6075-201ENST00000620782 95 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 AC027309.3-201ENST00000623419 351 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 AL606534.2-204ENST00000635008 178 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 U4.7-201ENST00000638126 106 ntBASIC3.78□□□□□ -1.8
ERCC4Q92889 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
ERCC4Q92889 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.81
ERCC4Q92889 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.78□□□□□ -1.81
ERCC4Q92889 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.81
ERCC4Q92889 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
ERCC4Q92889 Y_RNA.153-201ENST00000363615 91 ntBASIC3.77□□□□□ -1.81
ERCC4Q92889 RNU6-196P-201ENST00000384315 107 ntBASIC3.77□□□□□ -1.81
ERCC4Q92889 EIF4EP2-201ENST00000422816 654 ntBASIC3.77□□□□□ -1.81
ERCC4Q92889 MTCYBP10-201ENST00000424905 650 ntBASIC3.77□□□□□ -1.81
ERCC4Q92889 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 165.1 ms