Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SNORD115-47-201ENST00000391226 86 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 RNU4-26P-201ENST00000410270 107 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.93□□□□□ -1.94
HOXC11O43248 SNORD56-201ENST00000413522 71 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 SNRPEP10-201ENST00000420249 274 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 NUP35P1-201ENST00000422734 947 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXC11O43248 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXC11O43248 C8orf59P1-201ENST00000429930 303 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXC11O43248 RPL7P12-201ENST00000446719 750 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 AL031274.1-201ENST00000450334 232 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXC11O43248 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXC11O43248 AC133134.1-201ENST00000466800 359 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 AC018437.1-201ENST00000492214 406 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 MTCYBP40-201ENST00000509390 1135 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 MTND1P5-201ENST00000517906 940 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXC11O43248 AC079598.5-201ENST00000547460 117 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXC11O43248 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXC11O43248 AC090616.3-201ENST00000582184 217 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 AC244517.12-201ENST00000623581 663 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXC11O43248 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXC11O43248 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXC11O43248 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
HOXC11O43248 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
HOXC11O43248 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXC11O43248 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXC11O43248 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HOXC11O43248 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HOXC11O43248 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXC11O43248 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXC11O43248 AC135776.4-201ENST00000624300 1904 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 MIR514A2-201ENST00000385131 88 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 MIR514A3-201ENST00000385132 88 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 MIR548F1-201ENST00000408667 84 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 RNA5SP390-201ENST00000410191 113 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 AC245054.2-201ENST00000415639 319 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 EIF1P1-201ENST00000421436 341 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 AC063976.3-201ENST00000426849 329 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 UBE2V1P8-201ENST00000437166 265 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 RPL39P40-201ENST00000445481 146 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 RNU6-1208P-201ENST00000459588 107 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.92□□□□□ -1.94
HOXC11O43248 AC103975.1-201ENST00000482506 483 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXC11O43248 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXC11O43248 RNU6-718P-201ENST00000516166 105 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 SNORA31.23-201ENST00000517219 133 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 AC079600.2-201ENST00000550076 130 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXC11O43248 AL118558.2-201ENST00000556294 238 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXC11O43248 AC123912.5-201ENST00000605470 343 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 AL121917.1-203ENST00000605534 577 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 RNU6-89P-201ENST00000606519 100 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 AL449363.1-201ENST00000617815 186 ntBASIC2.92□□□□□ -1.94
HOXC11O43248 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
HOXC11O43248 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
HOXC11O43248 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXC11O43248 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.91□□□□□ -1.94
HOXC11O43248 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.91□□□□□ -1.94
HOXC11O43248 AL360182.1-201ENST00000397433 468 ntBASIC2.91□□□□□ -1.94
HOXC11O43248 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
HOXC11O43248 U6atac.2-201ENST00000408644 118 ntBASIC2.91□□□□□ -1.94
HOXC11O43248 RNU6-373P-201ENST00000411247 98 ntBASIC2.91□□□□□ -1.94
HOXC11O43248 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.91□□□□□ -1.94
HOXC11O43248 RPL30P4-201ENST00000429309 333 ntBASIC2.91□□□□□ -1.94
HOXC11O43248 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.91□□□□□ -1.94
HOXC11O43248 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.91□□□□□ -1.94
HOXC11O43248 UQCRHP3-201ENST00000451503 251 ntBASIC2.91□□□□□ -1.94
HOXC11O43248 RNU7-138P-201ENST00000459479 64 ntBASIC2.91□□□□□ -1.94
HOXC11O43248 RPL7P43-201ENST00000478876 753 ntBASIC2.91□□□□□ -1.94
HOXC11O43248 AC098799.2-201ENST00000509466 868 ntBASIC2.91□□□□□ -1.94
HOXC11O43248 SNORA19.2-201ENST00000516013 114 ntBASIC2.91□□□□□ -1.94
HOXC11O43248 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXC11O43248 AC078814.3-201ENST00000553036 491 ntBASIC2.91□□□□□ -1.94
HOXC11O43248 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXC11O43248 AC105245.1-201ENST00000581934 244 ntBASIC2.91□□□□□ -1.94
HOXC11O43248 AL357078.3-201ENST00000607528 618 ntBASIC2.91□□□□□ -1.94
HOXC11O43248 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXC11O43248 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
HOXC11O43248 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.91□□□□□ -1.94
HOXC11O43248 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
HOXC11O43248 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXC11O43248 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.91□□□□□ -1.94
HOXC11O43248 RNU6-451P-201ENST00000362921 107 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 Y_RNA.89-201ENST00000363031 102 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 Y_RNA.295-201ENST00000364918 102 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 Y_RNA.505-201ENST00000384489 102 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 MIR181B1-201ENST00000385240 110 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 EIF4E2P1-201ENST00000393781 255 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 Y_RNA.619-201ENST00000410951 90 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 HMGN2P35-201ENST00000412164 270 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.9□□□□□ -1.95
HOXC11O43248 MTND1P4-201ENST00000435196 415 ntBASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms