Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 PDCD5P2-201ENST00000507570 312 ntBASIC0.29□□□□□ -2.36
TRAV1-2A0A0B4J238 AF131216.2-201ENST00000512316 564 ntBASIC0.29□□□□□ -2.36
TRAV1-2A0A0B4J238 RNU6-991P-201ENST00000516168 107 ntBASIC0.29□□□□□ -2.36
TRAV1-2A0A0B4J238 SNORA70.22-201ENST00000517160 124 ntBASIC0.29□□□□□ -2.36
TRAV1-2A0A0B4J238 RNA5SP437-201ENST00000517249 129 ntBASIC0.29□□□□□ -2.36
TRAV1-2A0A0B4J238 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC0.29□□□□□ -2.36
TRAV1-2A0A0B4J238 BNIP3P16-201ENST00000589779 534 ntBASIC0.29□□□□□ -2.36
TRAV1-2A0A0B4J238 AL512605.2-201ENST00000592972 256 ntBASIC0.29□□□□□ -2.36
TRAV1-2A0A0B4J238 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.29□□□□□ -2.36
TRAV1-2A0A0B4J238 AC233981.2-201ENST00000611524 1614 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 RNA5SP347-201ENST00000362445 119 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 RNU6-223P-201ENST00000362830 107 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 CBX3P9-201ENST00000402326 552 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 AL356776.1-201ENST00000406574 447 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 MTND4P6-201ENST00000438297 472 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 MTCO3P45-201ENST00000443036 613 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 GTF2IP12-201ENST00000456547 356 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 RNU1-131P-201ENST00000458943 161 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 RNA5SP269-201ENST00000459032 137 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 RNU4-54P-201ENST00000516428 129 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 RNA5SP503-201ENST00000517047 117 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 RNU6-165P-201ENST00000517170 99 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 AC104229.1-201ENST00000561364 255 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 AC136618.2-201ENST00000575091 400 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 AC112220.2-201ENST00000605513 533 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 AC093788.1-201ENST00000609356 927 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 AC120349.3-201ENST00000624377 529 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 MIR1322-201ENST00000638013 71 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 LINC02555-201ENST00000563933 1951 ntBASIC0.28□□□□□ -2.36
TRAV1-2A0A0B4J238 RNA5SP361-201ENST00000362686 118 ntBASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU6-942P-201ENST00000363002 107 ntBASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 MIR520A-201ENST00000384862 85 ntBASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 TPMTP2-201ENST00000414372 726 ntBASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 RPS27AP8-201ENST00000452665 445 ntBASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU6-333P-201ENST00000459117 107 ntBASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 XACT-201ENST00000468762 497 ntTSL 5 BASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 AC108078.2-201ENST00000510750 236 ntBASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 RNA5SP168-201ENST00000516642 112 ntBASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 RN7SKP49-201ENST00000516675 260 ntBASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 RN7SKP258-201ENST00000517151 304 ntBASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 AC090142.3-201ENST00000519012 385 ntBASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 AC009902.1-201ENST00000519351 183 ntBASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 UTP23-205ENST00000520733 369 ntTSL 3 BASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 MIR4782-201ENST00000577987 79 ntBASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 MIR4714-201ENST00000580728 77 ntBASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 AC253576.2-201ENST00000618815 580 ntBASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 AC068647.2-201ENST00000637380 353 ntBASIC0.27□□□□□ -2.37
TRAV1-2A0A0B4J238 AC134026.1-201ENST00000623249 2239 ntBASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 MIR337-201ENST00000362281 93 ntBASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 AC138623.1-201ENST00000418060 216 ntBASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 MTCO2P25-201ENST00000447065 681 ntBASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 AC005840.1-201ENST00000498412 377 ntBASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 RNA5SP458-201ENST00000516188 119 ntBASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU6-229P-201ENST00000516614 102 ntBASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 RNA5SP102-201ENST00000516865 106 ntBASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 AC006518.2-201ENST00000542513 940 ntBASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 AP001981.2-201ENST00000603241 418 ntBASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 DPPA3P3-201ENST00000603842 430 ntBASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 AP001596.2-201ENST00000608410 312 ntBASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
TRAV1-2A0A0B4J238 Y_RNA.40-201ENST00000362645 93 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU6-655P-201ENST00000362858 107 ntBASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms