Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS28Q9UK41 AC096725.1-201ENST00000514266 313 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 SNORA40.12-201ENST00000516329 111 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 AC109329.1-201ENST00000518744 317 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 PSMA3P-201ENST00000555485 635 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 MIR4635-201ENST00000583759 79 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 RPL12P50-201ENST00000603116 116 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 AC092608.2-201ENST00000624427 218 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS28Q9UK41 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.73□□□□□ -1.97
VPS28Q9UK41 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS28Q9UK41 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS28Q9UK41 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS28Q9UK41 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
VPS28Q9UK41 RNU4-40P-201ENST00000364351 143 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 Y_RNA.481-201ENST00000384373 102 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 RNU1-57P-201ENST00000384491 166 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 RNA5SP390-201ENST00000410191 113 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 RNU6-1140P-201ENST00000410517 106 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 RNU2-63P-201ENST00000410792 194 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 HMGN2P35-201ENST00000412164 270 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS28Q9UK41 AC016907.1-201ENST00000419483 435 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS28Q9UK41 MRPL50P4-201ENST00000446432 475 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS28Q9UK41 RNU7-180P-201ENST00000459240 63 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 AC073901.1-201ENST00000462471 408 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 DYNLL1P5-201ENST00000467158 270 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 AC140059.1-201ENST00000489238 361 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 RPL23AP49-201ENST00000492925 468 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS28Q9UK41 MTCYBP40-201ENST00000509390 1135 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS28Q9UK41 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS28Q9UK41 AL133241.1-201ENST00000556832 487 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 AC090897.2-201ENST00000581715 130 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 AL136363.2-201ENST00000604173 851 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 Z82243.1-201ENST00000609432 473 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.72□□□□□ -1.97
VPS28Q9UK41 AC093783.1-201ENST00000612976 329 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 uc_338.34-201ENST00000617467 174 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 MIR5739-201ENST00000619803 80 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 AP003400.5-201ENST00000624827 617 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 AL136360.1-201ENST00000503377 1900 ntBASIC2.72□□□□□ -1.97
VPS28Q9UK41 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS28Q9UK41 SNORD56.1-201ENST00000362913 68 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 RNU1-72P-201ENST00000362976 153 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 RNU6-1322P-201ENST00000364309 107 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 Y_RNA.436-201ENST00000384097 102 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 AL606923.1-201ENST00000406616 190 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS28Q9UK41 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS28Q9UK41 AC016691.1-201ENST00000441321 413 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 FDX1P2-201ENST00000450769 375 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 RNU6-261P-201ENST00000459506 102 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 AC133134.1-201ENST00000466800 359 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 AC083798.1-201ENST00000472671 131 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 UBE2DNL-203ENST00000474922 222 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS28Q9UK41 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS28Q9UK41 RPL9P6-201ENST00000492764 598 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 CKS1BP2-201ENST00000497342 240 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS28Q9UK41 MTND4P7-201ENST00000523876 130 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 AP001893.2-201ENST00000526949 202 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
VPS28Q9UK41 AC023050.3-201ENST00000541142 333 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS28Q9UK41 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS28Q9UK41 MIR5583-1-201ENST00000580941 59 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 MIR3162-201ENST00000581818 82 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 AL138963.2-201ENST00000605137 226 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 U2.17-201ENST00000611454 95 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 uc_338.15-201ENST00000615470 191 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.98
VPS28Q9UK41 AC010297.1-201ENST00000623948 149 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 AC124864.2-201ENST00000624736 186 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 U4.7-201ENST00000638126 106 ntBASIC2.71□□□□□ -1.98
VPS28Q9UK41 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
VPS28Q9UK41 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-37P-201ENST00000362692 107 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-11P-201ENST00000364234 107 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNA5SP240-201ENST00000365355 128 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-25P-201ENST00000383873 107 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-1-201ENST00000383898 107 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 Y_RNA.409-201ENST00000383990 98 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-48P-201ENST00000384161 107 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-36P-201ENST00000384172 107 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-4P-201ENST00000384205 107 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-5P-201ENST00000384238 107 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-3P-201ENST00000384314 107 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-16P-201ENST00000384385 107 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 Y_RNA.500-201ENST00000384466 111 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-15P-201ENST00000384534 107 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-2-201ENST00000384627 107 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-29P-201ENST00000384637 107 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-9-201ENST00000384776 107 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-33P-201ENST00000384793 107 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms