Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.49□□□□□ -2.17
USP42Q9H9J4 AC099654.8-201ENST00000637757 681 ntBASIC1.49□□□□□ -2.17
USP42Q9H9J4 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC1.49□□□□□ -2.17
USP42Q9H9J4 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.49□□□□□ -2.17
USP42Q9H9J4 RNU6-1284P-201ENST00000363701 100 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 SNORD116-12-201ENST00000384468 92 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 RNU6-1257P-201ENST00000384625 110 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 RNU2-32P-201ENST00000411193 191 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.48□□□□□ -2.17
USP42Q9H9J4 AC008267.5-201ENST00000424928 265 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 USP9YP11-201ENST00000427537 717 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC1.48□□□□□ -2.17
USP42Q9H9J4 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.48□□□□□ -2.17
USP42Q9H9J4 RPS25P9-201ENST00000435591 252 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 MTCO2P20-201ENST00000437339 673 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 AL078601.1-201ENST00000444542 271 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 AC245102.2-201ENST00000448956 180 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 AC109927.2-201ENST00000506416 303 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 AC096745.1-201ENST00000509945 370 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 AC109445.1-201ENST00000512356 383 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 RNU2-53P-201ENST00000516257 147 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 RN7SKP265-201ENST00000516448 223 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 RNU6-467P-201ENST00000517027 110 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.48□□□□□ -2.17
USP42Q9H9J4 DEFB108A-201ENST00000530110 222 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.48□□□□□ -2.17
USP42Q9H9J4 AP000763.2-201ENST00000540641 163 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC1.48□□□□□ -2.17
USP42Q9H9J4 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
USP42Q9H9J4 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
USP42Q9H9J4 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
USP42Q9H9J4 AC245060.5-201ENST00000610778 3293 ntBASIC1.48□□□□□ -2.17
USP42Q9H9J4 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.47□□□□□ -2.17
USP42Q9H9J4 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
USP42Q9H9J4 RNU6-621P-201ENST00000364752 109 ntBASIC1.47□□□□□ -2.17
USP42Q9H9J4 RNU6-342P-201ENST00000384521 104 ntBASIC1.47□□□□□ -2.17
USP42Q9H9J4 MIR597-201ENST00000384968 97 ntBASIC1.47□□□□□ -2.17
USP42Q9H9J4 MIR29C-201ENST00000385231 88 ntBASIC1.47□□□□□ -2.17
USP42Q9H9J4 MIR301A-201ENST00000385261 86 ntBASIC1.47□□□□□ -2.17
USP42Q9H9J4 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
USP42Q9H9J4 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC1.47□□□□□ -2.17
USP42Q9H9J4 SNRPEP10-201ENST00000420249 274 ntBASIC1.47□□□□□ -2.17
USP42Q9H9J4 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC1.47□□□□□ -2.17
USP42Q9H9J4 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC1.47□□□□□ -2.17
USP42Q9H9J4 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC1.47□□□□□ -2.17
USP42Q9H9J4 FCF1P6-201ENST00000456841 595 ntBASIC1.47□□□□□ -2.17
USP42Q9H9J4 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.47□□□□□ -2.17
USP42Q9H9J4 RNU6-953P-201ENST00000459154 107 ntBASIC1.47□□□□□ -2.17
USP42Q9H9J4 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC1.47□□□□□ -2.17
USP42Q9H9J4 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.47□□□□□ -2.17
USP42Q9H9J4 MTCYBP23-201ENST00000558717 1102 ntBASIC1.47□□□□□ -2.17
USP42Q9H9J4 AC025678.1-201ENST00000567861 338 ntBASIC1.47□□□□□ -2.17
USP42Q9H9J4 AC109446.2-201ENST00000567872 497 ntBASIC1.47□□□□□ -2.17
USP42Q9H9J4 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.47□□□□□ -2.17
USP42Q9H9J4 AC007363.1-201ENST00000604736 620 ntBASIC1.47□□□□□ -2.17
USP42Q9H9J4 RNU6-743P-201ENST00000364151 106 ntBASIC1.46□□□□□ -2.18
USP42Q9H9J4 MIR598-201ENST00000384868 97 ntBASIC1.46□□□□□ -2.18
USP42Q9H9J4 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
USP42Q9H9J4 SNORA40.4-201ENST00000390971 128 ntBASIC1.46□□□□□ -2.18
USP42Q9H9J4 VPS26BP1-201ENST00000417155 755 ntBASIC1.46□□□□□ -2.18
USP42Q9H9J4 AC009518.2-201ENST00000418056 731 ntBASIC1.46□□□□□ -2.18
USP42Q9H9J4 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC1.46□□□□□ -2.18
USP42Q9H9J4 MTND2P29-201ENST00000438595 412 ntBASIC1.46□□□□□ -2.18
USP42Q9H9J4 AL117351.1-201ENST00000438864 766 ntBASIC1.46□□□□□ -2.18
USP42Q9H9J4 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC1.46□□□□□ -2.18
USP42Q9H9J4 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC1.46□□□□□ -2.18
USP42Q9H9J4 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.46□□□□□ -2.18
USP42Q9H9J4 AC021146.2-201ENST00000504736 556 ntBASIC1.46□□□□□ -2.18
USP42Q9H9J4 AC008834.1-201ENST00000511612 175 ntBASIC1.46□□□□□ -2.18
USP42Q9H9J4 RN7SKP49-201ENST00000516675 260 ntBASIC1.46□□□□□ -2.18
USP42Q9H9J4 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC1.46□□□□□ -2.18
USP42Q9H9J4 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.46□□□□□ -2.18
USP42Q9H9J4 AP003392.2-201ENST00000527269 208 ntBASIC1.46□□□□□ -2.18
USP42Q9H9J4 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC1.46□□□□□ -2.18
USP42Q9H9J4 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
USP42Q9H9J4 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC1.46□□□□□ -2.18
USP42Q9H9J4 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC1.46□□□□□ -2.18
USP42Q9H9J4 AC016727.2-201ENST00000603988 621 ntBASIC1.46□□□□□ -2.18
USP42Q9H9J4 AL022345.1-201ENST00000607292 135 ntBASIC1.46□□□□□ -2.18
USP42Q9H9J4 AC103810.8-201ENST00000607347 118 ntBASIC1.46□□□□□ -2.18
USP42Q9H9J4 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC1.46□□□□□ -2.18
USP42Q9H9J4 AL359314.1-201ENST00000616913 261 ntBASIC1.46□□□□□ -2.18
USP42Q9H9J4 U1.36-201ENST00000620684 176 ntBASIC1.46□□□□□ -2.18
USP42Q9H9J4 RNU6-546P-201ENST00000383991 107 ntBASIC1.45□□□□□ -2.18
USP42Q9H9J4 RNU6-413P-201ENST00000384115 107 ntBASIC1.45□□□□□ -2.18
USP42Q9H9J4 MIR518D-201ENST00000385014 87 ntBASIC1.45□□□□□ -2.18
USP42Q9H9J4 RNA5SP465-201ENST00000391195 109 ntBASIC1.45□□□□□ -2.18
USP42Q9H9J4 CISD1P1-201ENST00000393907 327 ntBASIC1.45□□□□□ -2.18
USP42Q9H9J4 FCF1P10-201ENST00000407590 479 ntBASIC1.45□□□□□ -2.18
USP42Q9H9J4 MIR1262-201ENST00000408276 93 ntBASIC1.45□□□□□ -2.18
USP42Q9H9J4 MIR1283-2-201ENST00000408621 87 ntBASIC1.45□□□□□ -2.18
USP42Q9H9J4 RNU6-1025P-201ENST00000410629 104 ntBASIC1.45□□□□□ -2.18
USP42Q9H9J4 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.45□□□□□ -2.18
USP42Q9H9J4 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC1.45□□□□□ -2.18
USP42Q9H9J4 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.45□□□□□ -2.18
USP42Q9H9J4 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC1.45□□□□□ -2.18
USP42Q9H9J4 AC108059.3-201ENST00000456388 214 ntBASIC1.45□□□□□ -2.18
USP42Q9H9J4 PRELID3BP1-201ENST00000457142 540 ntBASIC1.45□□□□□ -2.18
USP42Q9H9J4 AC087884.1-201ENST00000469738 328 ntBASIC1.45□□□□□ -2.18
USP42Q9H9J4 AC087343.1-201ENST00000477341 475 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms